1BH6

SUBTILISIN DY IN COMPLEX WITH THE SYNTHETIC INHIBITOR N-BENZYLOXYCARBONYL-ALA-PRO-PHE-CHLOROMETHYL KETONE


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1CSEPDB ENTRY 1CSE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16AS GIVEN IN REFERENCE 1, pH 6.0
Crystal Properties
Matthews coefficientSolvent content
2.141

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.83α = 90
b = 72.75β = 90
c = 59.89γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray278IMAGE PLATEMARRESEARCH1993-02-09M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.751096.70.030.03234.422887
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.751.7992.20.0520.052143.1

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 1CSE1.75102288796.70.14
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor18.4
p_staggered_tor13.6
p_scangle_it4.9
p_planar_tor3.6
p_scbond_it3.3
p_mcangle_it2.9
p_mcbond_it2.2
p_multtor_nbd0.29
p_singtor_nbd0.12
p_planar_d0.048
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor18.4
p_staggered_tor13.6
p_scangle_it4.9
p_planar_tor3.6
p_scbond_it3.3
p_mcangle_it2.9
p_mcbond_it2.2
p_multtor_nbd0.29
p_singtor_nbd0.12
p_planar_d0.048
p_angle_d0.041
p_bond_d0.022
p_plane_restr0.019
p_chiral_restr0.018
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1948
Nucleic Acid Atoms
Solvent Atoms226
Heterogen Atoms36

Software

Software
Software NamePurpose
AMoREphasing
CCP4refinement
DENZOdata reduction
SCALEPACKdata scaling