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XYLANASE FROM PENICILLIUM SIMPLICISSIMUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XYZ PDB ENTRY 1XYZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.4 277 PROTEIN WAS CRYSTALLIZED FROM 1.9M (NH4)2SO4, 0.1M TRISHCL PH 8.4 AT 4 C, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.25 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.02 α = 90 b = 81.02 β = 90 c = 113.4 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE AREA DETECTOR MARRESEARCH TOROIDAL MIRROR 1997-07-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 10 100 0.059 15 5 43712 -3 11.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.79 100 0.232 4 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R THROUGHOUT PDB ENTRY 1XYZ 1.75 10 43712 4462 100 0.2 0.2 0.1821 0.229 0.2076 RANDOM 10
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_scangle_it 3.923 x_scbond_it 3.441 x_mcangle_it 2.844 x_mcbond_it 2.532 x_bond_d x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot
RMS Deviations Key Refinement Restraint Deviation x_scangle_it 3.923 x_scbond_it 3.441 x_mcangle_it 2.844 x_mcbond_it 2.532 x_bond_d x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2298 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 64
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building X-PLOR refinement X-PLOR phasing