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BOUND CONFORMATION OF N-TERMINAL CLEAVAGE PRODUCT PEPTIDE MIMIC (P1-P9 OF RELEASE SITE) WHILE BOUND TO HCMV PROTEASE AS DETERMINED BY TRANSFERRED NOESY EXPERIMENTS (P1-P5 SHOWN ONLY), NMR, 32 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | TRNOESY | 0.5M NA2SO4, 50MM NACL, 1MM EDTA, 5MM DTT-D10 IN 10% D2O SPIKED WITH TSP-2,2,3,3-D4 | 7.0 | 285 | ||||
2 | NOESY | 0.5M NA2SO4, 50MM NACL, 1MM EDTA, 5MM DTT-D10 IN 10% D2O SPIKED WITH TSP-2,2,3,3-D4 | 7.0 | 285 | ||||
3 | TOCSY | 0.5M NA2SO4, 50MM NACL, 1MM EDTA, 5MM DTT-D10 IN 10% D2O SPIKED WITH TSP-2,2,3,3-D4 | 7.0 | 285 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX400 | 400 |
2 | Bruker | AMX500 | 500 |
3 | Bruker | DRX500 | 600 |
4 | Bruker | DMX600 | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
RESTRAINED SIMULATED ANNEALING | REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. CFF95 FORCEFIELD USED. | Discover |
NMR Ensemble Information | |
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Conformer Selection Criteria | POTENTIAL ENERGY, MINIMAL RESTRAINT VIOLATIONS |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 32 |
Representative Model | 4 (n/a) |
Additional NMR Experimental Information | |
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Details | TRANSFERRED NUCLEAR OVERHAUSER EFFECT SPECTROSCOPY 50, 150, 250 MS MIXING TIMES USED TO GENERATE RESTRAINTS |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Discover | 95.5 | MSI |
2 | structure solution | Discover | 95.5 |