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THROMBIN INHIBITORS WITH RIGID TRIPEPTIDYL ALDEHYDES
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TMB PDB ENTRY 1TMB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.14 α = 90 b = 72.26 β = 100.7 c = 72.73 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 300 IMAGE PLATE RIGAKU 1995-09-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 86 0.059 0.12 12.2 2 19592 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.4 39 0.13 0.25 2.5 2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1TMB 2.1 7 4 17909 75 0.157 27.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_planar_tor 4 p_scangle_it 3.8 p_scbond_it 2.6 p_mcangle_it 1.8 p_mcbond_it 1.1 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.22
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_planar_tor 4 p_scangle_it 3.8 p_scbond_it 2.6 p_mcangle_it 1.8 p_mcbond_it 1.1 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.22 p_chiral_restr 0.15 p_planar_d 0.055 p_angle_d 0.042 p_plane_restr 0.027 p_bond_d 0.012 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2241 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 37
Software Software Software Name Purpose R-AXIS data collection R-AXIS data reduction X-PLOR model building PROLSQ refinement X-PLOR refinement R-AXIS data scaling X-PLOR phasing