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THROMBIN INHIBITOR WITH A RIGID TRIPEPTIDYL ALDEHYDES
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TMB PDB ENTRY 1TMB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.26 α = 90 b = 72.29 β = 100.9 c = 72.99 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 300 IMAGE PLATE RIGAKU 1995-08-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 61 0.045 0.12 14 2.5 22257 2.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 2 38 0.07 0.25 2.5 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1TMB 1.8 7 4 17478 75 0.152 26.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_planar_tor 4 p_scangle_it 3.8 p_scbond_it 2.6 p_mcangle_it 1.8 p_mcbond_it 1.1 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.22
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_planar_tor 4 p_scangle_it 3.8 p_scbond_it 2.6 p_mcangle_it 1.8 p_mcbond_it 1.1 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.22 p_chiral_restr 0.15 p_planar_d 0.055 p_angle_d 0.04 p_plane_restr 0.03 p_bond_d 0.018 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2347 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 46
Software Software Software Name Purpose R-AXIS data collection R-AXIS data reduction X-PLOR model building PROLSQ refinement X-PLOR refinement R-AXIS data scaling X-PLOR phasing