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PRISTINE RECOMB. LIGNIN PEROXIDASE H8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1B80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5 pH 3.5
Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.26 α = 90 b = 94.42 β = 90 c = 228.05 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH 1998-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 94.7 0.042 20 3.4 69484 18.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.83 89.9 0.195 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1B80 1.8 30 69466 69466 94.6 0.163 0.1491 0.194 RANDOM 25.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 33.1 p_staggered_tor 12.4 p_planar_tor 3.6 p_scangle_it 3.13 p_mcangle_it 2.2 p_scbond_it 1.95 p_mcbond_it 1.48 p_multtor_nbd 0.26 p_singtor_nbd 0.17 p_xyhbond_nbd 0.143
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 33.1 p_staggered_tor 12.4 p_planar_tor 3.6 p_scangle_it 3.13 p_mcangle_it 2.2 p_scbond_it 1.95 p_mcbond_it 1.48 p_multtor_nbd 0.26 p_singtor_nbd 0.17 p_xyhbond_nbd 0.143 p_chiral_restr 0.13 p_planar_d 0.034 p_angle_d 0.027 p_plane_restr 0.021 p_bond_d 0.012 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5224 Nucleic Acid Atoms Solvent Atoms 548 Heterogen Atoms 92
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement