☰ Navigation Tabs
NEUROTOXIN (TS1) FROM BRAZILIAN SCORPION TITYUS SERRULATUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AHO PDB ENTRY 1AHO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6.0
Crystal Properties Matthews coefficient Solvent content 1.81 32.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 22.21 α = 90 b = 36.54 β = 100.76 c = 31.72 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE MAR scanner 345 mm plate CYLINDRICAL MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 13 97.1 0.066 2.6 5149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.73 1.77 81.6 0.26 3 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AHO 1.73 13 5149 97.1 0.178 0.181 0.238 0.2125 RANDOM 21.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_special_tor 15 p_staggered_tor 12.9 p_transverse_tor 10 p_scangle_it 6.481 p_scbond_it 4.698 p_planar_tor 4.3 p_mcangle_it 3.38 p_mcbond_it 2.404 p_multtor_nbd 0.27 p_xyhbond_nbd 0.181
RMS Deviations Key Refinement Restraint Deviation p_special_tor 15 p_staggered_tor 12.9 p_transverse_tor 10 p_scangle_it 6.481 p_scbond_it 4.698 p_planar_tor 4.3 p_mcangle_it 3.38 p_mcbond_it 2.404 p_multtor_nbd 0.27 p_xyhbond_nbd 0.181 p_singtor_nbd 0.177 p_chiral_restr 0.144 p_angle_d 0.032 p_planar_d 0.032 p_plane_restr 0.027 p_bond_d 0.012 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 483 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement