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OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KDK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OLB PDB ENTRY 1OLB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.47 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.01 α = 90 b = 75.55 β = 90 c = 70.381 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE RIGAKU MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 15 92.2 0.079 6.5 6.4 59716 19.64
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.8 59.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT PDB ENTRY 1OLB 1.75 15 59716 2743 92.2 0.1792 0.214 21.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.2 p_staggered_tor 15.6 p_planar_tor 3.8 p_scangle_it 2.753 p_mcangle_it 1.942 p_scbond_it 1.879 p_mcbond_it 1.375 p_multtor_nbd 0.25 p_singtor_nbd 0.176 p_xyhbond_nbd 0.127
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.2 p_staggered_tor 15.6 p_planar_tor 3.8 p_scangle_it 2.753 p_mcangle_it 1.942 p_scbond_it 1.879 p_mcbond_it 1.375 p_multtor_nbd 0.25 p_singtor_nbd 0.176 p_xyhbond_nbd 0.127 p_planar_d 0.032 p_angle_d 0.029 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4202 Nucleic Acid Atoms Solvent Atoms 457 Heterogen Atoms 31
Software Software Software Name Purpose DENZO data reduction SCALA data scaling CCP4 model building REFMAC refinement CCP4 data scaling CCP4 phasing