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OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KPK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OLB PDB ENTRY 1OLB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.46 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.019 α = 90 b = 75.478 β = 90 c = 70.242 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 15 98.4 0.069 5.4 2.8 59716 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.83 92.7 0.365
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT PDB ENTRY 1OLB 1.8 15 54776 2681 99.6 0.1772 0.217 30.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.2 p_staggered_tor 14.9 p_planar_tor 3.6 p_scangle_it 2.559 p_mcangle_it 2.026 p_scbond_it 1.734 p_mcbond_it 1.362 p_multtor_nbd 0.248 p_singtor_nbd 0.175 p_xyhbond_nbd 0.131
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.2 p_staggered_tor 14.9 p_planar_tor 3.6 p_scangle_it 2.559 p_mcangle_it 2.026 p_scbond_it 1.734 p_mcbond_it 1.362 p_multtor_nbd 0.248 p_singtor_nbd 0.175 p_xyhbond_nbd 0.131 p_planar_d 0.03 p_angle_d 0.028 p_bond_d 0.011 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4205 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CCP4 model building REFMAC refinement CCP4 phasing