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OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KGK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OLB PDB ENTRY 1OLB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.29 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.91 α = 90 b = 74.8 β = 91.1 c = 103.77 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 15 96.2 0.087 6.6 4.3 40411 20.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.12 80.3 0.188 3.4 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT PDB ENTRY 1OLB 2 15 72216 2154 94.8 0.178 0.241 29.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.4 p_staggered_tor 17.8 p_planar_tor 4 p_scangle_it 3.526 p_mcangle_it 2.649 p_scbond_it 2.348 p_mcbond_it 1.886 p_multtor_nbd 0.255 p_singtor_nbd 0.177 p_xyhbond_nbd 0.154
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.4 p_staggered_tor 17.8 p_planar_tor 4 p_scangle_it 3.526 p_mcangle_it 2.649 p_scbond_it 2.348 p_mcbond_it 1.886 p_multtor_nbd 0.255 p_singtor_nbd 0.177 p_xyhbond_nbd 0.154 p_planar_d 0.039 p_angle_d 0.035 p_bond_d 0.016 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8390 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 1
Software Software Software Name Purpose DENZO data reduction SCALA data scaling CCP4 model building REFMAC refinement CCP4 data scaling CCP4 phasing