1B32

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KMK


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OLBPDB ENTRY 1OLB

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.5CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.4645

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.72α = 90
b = 75.72β = 90
c = 70.31γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7544.296.690.0593.36079914.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.751.7899.20.2034

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTPDB ENTRY 1OLB1.751559647294898.60.18160.21417.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.4
p_staggered_tor14.3
p_planar_tor3.5
p_scangle_it2.31
p_mcangle_it1.703
p_scbond_it1.554
p_mcbond_it1.187
p_multtor_nbd0.248
p_singtor_nbd0.176
p_xyhbond_nbd0.127
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.4
p_staggered_tor14.3
p_planar_tor3.5
p_scangle_it2.31
p_mcangle_it1.703
p_scbond_it1.554
p_mcbond_it1.187
p_multtor_nbd0.248
p_singtor_nbd0.176
p_xyhbond_nbd0.127
p_planar_d0.029
p_angle_d0.027
p_bond_d0.01
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4219
Nucleic Acid Atoms
Solvent Atoms437
Heterogen Atoms36

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CCP4model building
REFMACrefinement
CCP4phasing