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Structure of oligo-peptide binding protein complexed with LYS-CYS-LYS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OLB PDB ENTRY 1OLB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.48 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.55 α = 90 b = 76.12 β = 90 c = 70.5 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 15 96.2 0.087 6.6 4.3 40411 40411 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.12 80.3 0.188 3.4 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OLB 2 15 40411 40411 1935 96.2 0.1979 0.243 19.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 16.5 p_planar_tor 3.9 p_scangle_it 2.77 p_mcangle_it 2.152 p_scbond_it 1.904 p_mcbond_it 1.561 p_multtor_nbd 0.25 p_singtor_nbd 0.181 p_xyhbond_nbd 0.152
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 16.5 p_planar_tor 3.9 p_scangle_it 2.77 p_mcangle_it 2.152 p_scbond_it 1.904 p_mcbond_it 1.561 p_multtor_nbd 0.25 p_singtor_nbd 0.181 p_xyhbond_nbd 0.152 p_planar_d 0.035 p_angle_d 0.033 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4181 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALA data scaling CCP4 model building REFMAC refinement CCP4 data scaling CCP4 phasing