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ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH D-GALACTOSE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other UNLIGANDED ECORL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.
Crystal Properties Matthews coefficient Solvent content 3.83 67.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.202 α = 90 b = 72.99 β = 113.44 c = 71.29 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU FRANCKS MIRRORS (SUPPER 2 X 6 CM MIRRORS) 1996-06-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 95.4 0.06 0.06 20 3.4 28798 20.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 95 0.06 0.24 4.5 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER FROM PREVIOUSLY DETERMINED, RELATED STRUCTURE THROUGHOUT UNLIGANDED ECORL 1.95 6 27809 1710 99.5 0.179 0.179 0.1706 0.206 RANDOM 23.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.39 0.51 2.18 1.2
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.2 c_scangle_it 3.86 c_scbond_it 2.59 c_mcangle_it 2.15 c_mcbond_it 1.45 c_angle_deg 1.4 c_improper_angle_d 1.17 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.2 c_scangle_it 3.86 c_scbond_it 2.59 c_mcangle_it 2.15 c_mcbond_it 1.45 c_angle_deg 1.4 c_improper_angle_d 1.17 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1855 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 106
Software Software Software Name Purpose X-PLOR model building CNS refinement X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing