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ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH N-ACETYLLACTOSAMINE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LTE COMPLEX WITH LACTOSE, PDB ENTRY 1LTE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.
Crystal Properties Matthews coefficient Solvent content 3.83 67.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.93 α = 90 b = 73.17 β = 113.36 c = 71.31 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU RAXIS II FRANCKS MIRRORS (SUPPER 2 X 6 CM MIRRORS) 1993-09-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 94 0.052 0.052 13 2.4 27182 25.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.04 82 0.052 0.267 3.5 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER FROM PREVIOUSLY DETERMINED, RELATED STRUCTURE THROUGHOUT COMPLEX WITH LACTOSE, PDB ENTRY 1LTE 1.95 6 26190 2604 96 0.169 0.169 0.1594 0.177 RANDOM 27.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.77 -0.12 1.91 0.86
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.2 c_scangle_it 4.93 c_scbond_it 3.34 c_mcangle_it 2.45 c_mcbond_it 1.56 c_angle_deg 1.5 c_improper_angle_d 1.24 c_bond_d 0.006 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.2 c_scangle_it 4.93 c_scbond_it 3.34 c_mcangle_it 2.45 c_mcbond_it 1.56 c_angle_deg 1.5 c_improper_angle_d 1.24 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1855 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 108
Software Software Software Name Purpose X-PLOR model building CNS refinement X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing