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ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH N-ACTYLGALACTOSAMINE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other UNLIGANDED ECORL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.
Crystal Properties Matthews coefficient Solvent content 3.83 67.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.22 α = 90 b = 72.98 β = 113.33 c = 71.26 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU FRANCKS MIRRORS (SUPPER 2 X 6 CM MIRRORS) 1994-11-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98.6 0.049 0.049 30 4 30859 21.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 96.7 0.049 0.145 8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER FROM PREVIOUSLY DETERMINED, RELATED STRUCTURE THROUGHOUT UNLIGANDED ECORL 1.9 6 30841 939 99.1 0.18 0.18 0.1687 0.2 RANDOM 25.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.95 0.49 1.56 1.39
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27 c_scangle_it 3.65 c_scbond_it 2.44 c_mcangle_it 2.08 c_angle_deg 1.4 c_mcbond_it 1.35 c_improper_angle_d 1.2 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27 c_scangle_it 3.65 c_scbond_it 2.44 c_mcangle_it 2.08 c_angle_deg 1.4 c_mcbond_it 1.35 c_improper_angle_d 1.2 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1855 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 97
Software Software Software Name Purpose X-PLOR model building CNS refinement X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing