☰ Navigation Tabs
AMY2/BASI PROTEIN-PROTEIN COMPLEX FROM BARLEY SEED
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AMY AMY2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.7 pH 6.7
Crystal Properties Matthews coefficient Solvent content 2.35 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.5 α = 90 b = 96.18 β = 90 c = 170.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH 1994-03-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 15 92 0.105 8.4 95258
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2.1 82.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION PHASE COMBINATION THROUGHOUT AMY2 1.9 8 2 88165 91.3 0.208 0.208 0.1938 0.269 RANDOM 19.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.3 x_mcbond_it 2.1 x_mcangle_it 2 x_angle_deg 1.45 x_improper_angle_d 1.24 x_bond_d 0.007 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.3 x_mcbond_it 2.1 x_mcangle_it 2 x_angle_deg 1.45 x_improper_angle_d 1.24 x_bond_d 0.007 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9176 Nucleic Acid Atoms Solvent Atoms 749 Heterogen Atoms 8
Software Software Software Name Purpose XDS data scaling XSCALE data scaling X-PLOR model building X-PLOR refinement XDS data reduction X-PLOR phasing