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HERPES SIMPLEX VIRUS TYPE II PROTEASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VZV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 10% PEG4000, PH 5.0
Crystal Properties Matthews coefficient Solvent content 2.57 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.72 α = 90 b = 87.43 β = 90 c = 77.28 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR SIEMENS COLLIMATOR 1996-05-16 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 25 91 0.095 0.095 12 5 78502 2 37.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.61 88 0.24 0.24 3 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR, MIR THROUGHOUT 1VZV 2.5 10 2 14605 1475 85.6 0.205 0.205 0.291 RANDOM 21.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.7 x_scangle_it 7.34 x_mcangle_it 4.9 x_scbond_it 4.79 x_mcbond_it 3.11 x_angle_deg 1.9 x_improper_angle_d 1.49 x_bond_d 0.015 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.7 x_scangle_it 7.34 x_mcangle_it 4.9 x_scbond_it 4.79 x_mcbond_it 3.11 x_angle_deg 1.9 x_improper_angle_d 1.49 x_bond_d 0.015 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3293 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 20
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement XDS data reduction XDS data scaling X-PLOR phasing