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APICAL DOMAIN OF THE CHAPERONIN FROM THERMOPLASMA ACIDOPHILUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ASS GLOBULAR DOMAIN PORTION OF CRYSTAL FORM A (PDB ENTRY 1ASS)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5 pH 3.5
Crystal Properties Matthews coefficient Solvent content 3.63 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.91 α = 90 b = 79.91 β = 90 c = 70.25 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-03-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 19 94.8 0.064 20.6 2.7 6335 -3 39.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 71.8 0.145 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT RFREE GLOBULAR DOMAIN PORTION OF CRYSTAL FORM A (PDB ENTRY 1ASS) 2.8 10 6205 390 94.8 0.222 0.222 0.2316 0.272 0.2824 CONCENTRIC SHELLS 36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 20.55 14.18 20.55 34
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 23.93 x_angle_deg 1.575 x_improper_angle_d 1.351 x_bond_d 0.011 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 23.93 x_angle_deg 1.575 x_improper_angle_d 1.351 x_bond_d 0.011 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1175 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 5
Software Software Software Name Purpose SOLOMON phasing X-PLOR model building X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing