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TYPE-2 CU-DEPLETED LACCASE FROM COPRINUS CINEREUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AOZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.55 51.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.39 α = 90 b = 85.72 β = 90 c = 143.07 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 IMAGE PLATE MARRESEARCH LONG FOCUSSING MIRRORS 1996-07-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.6 0.1 0.1 8.4 5.4 152295 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.35 98.5 0.27 0.27 4.8 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AOZ 2.23 12 27750 1366 99.6 0.16 0.1519 0.22 RANDOM 22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.7 p_staggered_tor 19.1 p_planar_tor 4.2 p_scangle_it 2.673 p_mcangle_it 2.005 p_scbond_it 1.768 p_mcbond_it 1.319 p_multtor_nbd 0.238 p_singtor_nbd 0.184 p_xyhbond_nbd 0.173
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.7 p_staggered_tor 19.1 p_planar_tor 4.2 p_scangle_it 2.673 p_mcangle_it 2.005 p_scbond_it 1.768 p_mcbond_it 1.319 p_multtor_nbd 0.238 p_singtor_nbd 0.184 p_xyhbond_nbd 0.173 p_chiral_restr 0.141 p_planar_d 0.034 p_angle_d 0.033 p_bond_d 0.011 p_plane_restr 0.0088 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3848 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 24
Software Software Software Name Purpose DENZO data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling