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CATALYTIC DOMAIN OF VAMPIRE BAT (DESMODUS ROTUNDUS) SALIVA PLASMINOGEN ACTIVATOR IN COMPLEX WITH EGR-CMK (GLU-GLY-ARG CHLOROMETHYL KETONE)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RTF PDB ENTRY 1RTF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 pH 9.0
Crystal Properties Matthews coefficient Solvent content 3.58 65.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.86 α = 90 b = 73.86 β = 90 c = 135.19 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 IMAGE PLATE MARRESEARCH 1996-10-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 25 97.2 0.092 3.51 2.3 9582 3 65.48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 97.9 0.405 1.9 2.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1RTF 2.9 7 2 8624 94.2 0.198 0.198 29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.93 x_scangle_it 7.457 x_mcangle_it 5.967 x_scbond_it 5.003 x_mcbond_it 3.657 x_angle_deg 1.673 x_improper_angle_d 1.302 x_bond_d 0.009 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.93 x_scangle_it 7.457 x_mcangle_it 5.967 x_scbond_it 5.003 x_mcbond_it 3.657 x_angle_deg 1.673 x_improper_angle_d 1.302 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2083 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms 25
Software Software Software Name Purpose MOSFLM data reduction ROTAVATA data reduction X-PLOR model building X-PLOR refinement CCP4 data scaling X-PLOR phasing