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HEMOGLOBIN (VAL BETA1 MET, TRP BETA37 ALA) MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DXU BV1M STRUCTURE, PDB ENTRY 1DXU.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 2.3 M AMMONIUM SULFATE 0.3 M AMMONIUM PHOSPHATE PH 6.5 10 MM FERROUS CITRATE
Crystal Properties Matthews coefficient Solvent content 2.19 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.4 α = 90 b = 83.6 β = 99.3 c = 53.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 AREA DETECTOR XUONG-HAMLIN MULTIWIRE 1992-10-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 25 96.3 0.036 0.036 14.6 9.3 49388
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.94 90.8 0.182 0.182 3.45 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION ISOMORPHOUS WITH DEOXYHEMOGLOBIN A. THROUGHOUT BV1M STRUCTURE, PDB ENTRY 1DXU. 1.8 8 2 44641 44030 4411 96.3 0.169 0.161 0.223 RANDOM 20.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.7 p_staggered_tor 20.4 p_scangle_it 10.8 p_scbond_it 7.6 p_mcangle_it 2.8 p_planar_tor 2.7 p_mcbond_it 2.1 p_singtor_nbd 0.17 p_multtor_nbd 0.158 p_xyhbond_nbd 0.158
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.7 p_staggered_tor 20.4 p_scangle_it 10.8 p_scbond_it 7.6 p_mcangle_it 2.8 p_planar_tor 2.7 p_mcbond_it 2.1 p_singtor_nbd 0.17 p_multtor_nbd 0.158 p_xyhbond_nbd 0.158 p_chiral_restr 0.135 p_planar_d 0.047 p_angle_d 0.029 p_bond_d 0.012 p_plane_restr 0.012 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4368 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 172
Software Software Software Name Purpose PROLSQ refinement SDMS data reduction SDMS data scaling