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Crystal Structure of FtsZ with Z26781952
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-417 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.65 53.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.784 α = 90 b = 88.784 β = 90 c = 180.834 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-417 ftsz-417 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-417 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-417 2.089 43.112 100 0.194 0.202 0.055 0.998 9.8 13.4 47714
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-417 2.089 2.125 100 2.334 2.438 0.7 0.338 12.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.089 43.149 47702 2424 99.948 0.18 0.1785 0.1863 0.2143 0.2215 40.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.016 -0.008 -0.016 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.505 r_dihedral_angle_6_deg 13.718 r_lrange_it 9.62 r_lrange_other 9.59 r_scangle_it 7.873 r_scangle_other 7.871 r_dihedral_angle_1_deg 6.543 r_dihedral_angle_2_deg 6.386 r_scbond_it 5.161 r_scbond_other 5.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.505 r_dihedral_angle_6_deg 13.718 r_lrange_it 9.62 r_lrange_other 9.59 r_scangle_it 7.873 r_scangle_other 7.871 r_dihedral_angle_1_deg 6.543 r_dihedral_angle_2_deg 6.386 r_scbond_it 5.161 r_scbond_other 5.16 r_mcangle_it 4.751 r_mcangle_other 4.751 r_mcbond_it 3.319 r_mcbond_other 3.319 r_angle_refined_deg 1.703 r_angle_other_deg 0.628 r_symmetry_nbd_other 0.443 r_nbd_refined 0.222 r_symmetry_xyhbond_nbd_refined 0.205 r_xyhbond_nbd_refined 0.204 r_symmetry_nbd_refined 0.195 r_symmetry_xyhbond_nbd_other 0.194 r_nbtor_refined 0.17 r_nbd_other 0.161 r_symmetry_nbtor_other 0.11 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction