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Crystal Structure of FtsZ with F6616-3495
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1X initial MR model
Crystallization Crystalization Experiments ID Method pH Temperature Details ftsz-296 VAPOR DIFFUSION, SITTING DROP 5 294 0.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties Matthews coefficient Solvent content 2.64 53.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.868 α = 90 b = 88.868 β = 90 c = 179.62 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol ftsz-296 ftsz-296 x-ray 100 PIXEL DECTRIS EIGER X 9M KB 2025-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline ftsz-296 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.919764 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot ftsz-296 2.108 44.434 100 0.281 0.292 0.08 0.995 7.1 13.4 46168
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) ftsz-296 2.108 2.144 100 2.634 2.747 0.778 0.346 12.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.108 44.474 46148 2353 99.913 0.183 0.1807 0.1877 0.2174 0.2231 35.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.344 r_dihedral_angle_6_deg 14.856 r_lrange_it 8.544 r_lrange_other 8.497 r_dihedral_angle_2_deg 8.445 r_scangle_it 7.128 r_scangle_other 7.127 r_dihedral_angle_1_deg 6.781 r_scbond_it 4.557 r_scbond_other 4.556
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.344 r_dihedral_angle_6_deg 14.856 r_lrange_it 8.544 r_lrange_other 8.497 r_dihedral_angle_2_deg 8.445 r_scangle_it 7.128 r_scangle_other 7.127 r_dihedral_angle_1_deg 6.781 r_scbond_it 4.557 r_scbond_other 4.556 r_mcangle_it 4.292 r_mcangle_other 4.292 r_mcbond_it 2.835 r_mcbond_other 2.832 r_angle_refined_deg 1.657 r_angle_other_deg 0.643 r_symmetry_nbd_other 0.546 r_symmetry_xyhbond_nbd_refined 0.247 r_nbd_refined 0.22 r_nbd_other 0.203 r_xyhbond_nbd_refined 0.202 r_symmetry_nbd_refined 0.193 r_nbtor_refined 0.169 r_symmetry_nbtor_other 0.135 r_symmetry_xyhbond_nbd_other 0.096 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4230 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling XDS data reduction DIMPLE phasing PHASER phasing Coot model building gemmi data extraction