14UP | pdb_000014up

Crystal Structure of FtsZ with F6616-2660


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-146VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.373α = 90
b = 88.373β = 90
c = 178.663γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-146ftsz-146x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-146SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1461.95344.1871000.2090.2170.0590.9979.613.357117
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1461.9531.9861002.7522.8610.780.33913.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.95344.22657105284899.9460.1810.17890.18660.21250.218834.316
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.002-0.001-0.0020.008
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.18
r_dihedral_angle_6_deg14.208
r_lrange_it8.961
r_lrange_other8.918
r_dihedral_angle_2_deg8.91
r_scangle_it7.518
r_scangle_other7.517
r_dihedral_angle_1_deg6.722
r_scbond_it4.89
r_scbond_other4.889
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.18
r_dihedral_angle_6_deg14.208
r_lrange_it8.961
r_lrange_other8.918
r_dihedral_angle_2_deg8.91
r_scangle_it7.518
r_scangle_other7.517
r_dihedral_angle_1_deg6.722
r_scbond_it4.89
r_scbond_other4.889
r_mcangle_it4.281
r_mcangle_other4.281
r_mcbond_it2.922
r_mcbond_other2.918
r_angle_refined_deg1.735
r_angle_other_deg0.651
r_symmetry_nbd_other0.544
r_nbd_refined0.216
r_symmetry_xyhbond_nbd_refined0.216
r_xyhbond_nbd_refined0.209
r_nbd_other0.182
r_nbtor_refined0.169
r_symmetry_nbd_refined0.166
r_symmetry_xyhbond_nbd_other0.155
r_symmetry_nbtor_other0.127
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms310
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction