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Structure of a Strand-Displacement Complex of Human Mitochondrial DNA Polymerase Gamma
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9PCK
Sample Strand displacement Complex of Human Mitochondrial DNA Polymerase Gamma
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 395220 Reported Resolution (Å) 2.93 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (9PCK) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.6 IMAGE ACQUISITION Latitude CTF CORRECTION cryoSPARC 4.6 MODEL FITTING Coot 0.9.8.5 MODEL REFINEMENT PHENIX 2.0-5936 CLASSIFICATION cryoSPARC 4.6 RECONSTRUCTION cryoSPARC 4.6
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 5827907