☰ Navigation Tabs
Designed pentameric proton channel LLQL I13S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6MCT PDB entry 6MCT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 6% EG, 0.1 M NaCacod pH 6, 6.6% PEG 8K, 0.15 M ZnAcet
Crystal Properties Matthews coefficient Solvent content 2.56 51.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.181 α = 90 b = 85.409 β = 90 c = 87.192 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2024-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-1 0.97946 SSRL BL12-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 61.014 92.7 0.999 4.8 6.5 14299
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.24 2.31 81.3 0.406 0.5 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.8 61.014 7379 354 91.881 0.244 0.2424 0.2421 0.2783 0.2777 RANDOM 48.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.657 -0.962 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.253 r_dihedral_angle_6_deg 15.811 r_lrange_it 15.374 r_scangle_it 10.544 r_mcangle_it 8.505 r_scbond_it 7.04 r_mcbond_it 5.376 r_dihedral_angle_2_deg 5.041 r_dihedral_angle_1_deg 3.916 r_angle_refined_deg 1.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.253 r_dihedral_angle_6_deg 15.811 r_lrange_it 15.374 r_scangle_it 10.544 r_mcangle_it 8.505 r_scbond_it 7.04 r_mcbond_it 5.376 r_dihedral_angle_2_deg 5.041 r_dihedral_angle_1_deg 3.916 r_angle_refined_deg 1.829 r_symmetry_nbd_refined 0.428 r_nbtor_refined 0.318 r_symmetry_xyhbond_nbd_refined 0.282 r_nbd_refined 0.219 r_chiral_restr 0.142 r_ncsr_local_group_21 0.125 r_ncsr_local_group_30 0.121 r_ncsr_local_group_2 0.117 r_ncsr_local_group_25 0.116 r_ncsr_local_group_9 0.115 r_ncsr_local_group_10 0.112 r_ncsr_local_group_18 0.112 r_ncsr_local_group_42 0.11 r_ncsr_local_group_32 0.109 r_ncsr_local_group_4 0.106 r_ncsr_local_group_19 0.105 r_ncsr_local_group_38 0.102 r_ncsr_local_group_24 0.1 r_ncsr_local_group_11 0.099 r_ncsr_local_group_12 0.099 r_ncsr_local_group_37 0.097 r_ncsr_local_group_34 0.096 r_ncsr_local_group_45 0.096 r_ncsr_local_group_17 0.093 r_ncsr_local_group_1 0.091 r_ncsr_local_group_39 0.089 r_ncsr_local_group_31 0.088 r_ncsr_local_group_16 0.087 r_ncsr_local_group_27 0.087 r_ncsr_local_group_33 0.087 r_ncsr_local_group_20 0.086 r_ncsr_local_group_26 0.086 r_ncsr_local_group_7 0.085 r_ncsr_local_group_44 0.085 r_ncsr_local_group_15 0.083 r_ncsr_local_group_8 0.082 r_ncsr_local_group_40 0.082 r_ncsr_local_group_13 0.081 r_ncsr_local_group_41 0.081 r_ncsr_local_group_43 0.081 r_ncsr_local_group_6 0.075 r_ncsr_local_group_29 0.075 r_ncsr_local_group_3 0.073 r_ncsr_local_group_36 0.072 r_ncsr_local_group_23 0.071 r_xyhbond_nbd_refined 0.068 r_ncsr_local_group_5 0.067 r_ncsr_local_group_28 0.066 r_ncsr_local_group_22 0.063 r_ncsr_local_group_14 0.06 r_ncsr_local_group_35 0.053 r_bond_refined_d 0.008 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2116 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement Aimless data scaling DIALS data reduction PHASER phasing