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Cryo-EM structure of alpha-synuclein filaments (doublet) from M83(+/+) mouse brains with A53T mutation
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 30.587 r_long_range_B_other 30.559 r_scangle_other 24.983 r_scbond_it 14.959 r_scbond_other 14.921 r_mcangle_it 10.578 r_mcangle_other 10.562 r_dihedral_angle_3_deg 8.785 r_mcbond_it 6.648 r_mcbond_other 6.635
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 30.587 r_long_range_B_other 30.559 r_scangle_other 24.983 r_scbond_it 14.959 r_scbond_other 14.921 r_mcangle_it 10.578 r_mcangle_other 10.562 r_dihedral_angle_3_deg 8.785 r_mcbond_it 6.648 r_mcbond_other 6.635 r_dihedral_angle_1_deg 4.818 r_angle_refined_deg 1.53 r_angle_other_deg 0.54 r_chiral_restr 0.052 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Cryo-EM structure of alpha-synuclein filaments (doublet) from M83(+/+) mouse brains with A53T mutation
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 10056 Reported Resolution (Å) 3.1 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 2.39 Angular Rotation 179.619
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 5.1 MODEL REFINEMENT REFMAC 5.8.0430 RECONSTRUCTION Servalcat
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY