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Crystal structure of Casein Kinase 2 (CK2) alpha in complex with BMS-595
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other molecular substitution with internal model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1 M Tris-HCl pH 7.0, 0.2 M MnCl2, 16% PEG 5,000
Crystal Properties Matthews coefficient Solvent content 1.95 36.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.284 α = 90 b = 78.875 β = 90 c = 82.073 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 41.62 99.1 0.119 0.14 0.055 0.99 11.9 6.5 22831
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.05 0.484 0.571 0.223 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.962 41.036 1.44 22826 1855 98.52 0.1627 0.1604 0.1625 0.2147 0.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9638 2.8045 -1.8407
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.71 f_angle_d 1.01 f_chiral_restr 0.075 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2675 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 37
Software Software Software Name Purpose PHENIX refinement SCALA data scaling XDS data reduction PHENIX phasing PDB_EXTRACT data extraction