11LI | pdb_000011li

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7KHS

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	8.25	293	16% (w/v) PEG4K, 0.15 M MgCl2, 0.1M Tris/HCl pH 8.25

Crystal Properties
Matthews coefficient	Solvent content
2.29	46.29

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2018-03-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	1.0000	SLS	X10SA

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.53	61.56	95.7	0.044	0.055	0.999	15.19	2.8		65376

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.53	1.78	98.1		0.488	0.605	0.885	2.37	2.8

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.53	61.56	61188	4032	95.49	0.19146	0.1891	0.2026	0.22737	0.2373	RANDOM

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.7		1.14	0.51		-0.34

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.072
r_dihedral_angle_4_deg	18.25
r_dihedral_angle_3_deg	13.189
r_long_range_B_refined	6.567
r_long_range_B_other	6.494
r_dihedral_angle_1_deg	6.399
r_scangle_other	4.987
r_scbond_it	3.819
r_scbond_other	3.81
r_mcangle_it	3.25

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.072
r_dihedral_angle_4_deg	18.25
r_dihedral_angle_3_deg	13.189
r_long_range_B_refined	6.567
r_long_range_B_other	6.494
r_dihedral_angle_1_deg	6.399
r_scangle_other	4.987
r_scbond_it	3.819
r_scbond_other	3.81
r_mcangle_it	3.25
r_mcangle_other	3.25
r_mcbond_other	2.452
r_angle_refined_deg	1.898
r_angle_other_deg	1.401
r_chiral_restr	0.126
r_bond_refined_d	0.019
r_gen_planes_refined	0.011
r_bond_other_d	0.005
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3470
Nucleic Acid Atoms
Solvent Atoms	337
Heterogen Atoms	69

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.