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Crystal structure of mouse IgG2a-Fc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5VAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 295.15 0.2M Bis-Tris, pH 6.0, 0.2M Lithium Sulfate, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.85 51.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.248 α = 90 b = 98.136 β = 99.53 c = 61.922 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2024-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9999 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.21 79.05 99.7 0.176 0.209 0.112 0.975 11.4 3.4 13104
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.21 3.27 95.4 1.07 1.271 0.68 0.32 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.21 66.69 1.35 13086 626 99.57 0.2415 0.2391 0.239 0.2896 0.2897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.659 f_angle_d 1.694 f_chiral_restr 0.104 f_plane_restr 0.023 f_bond_d 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4989 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 319
Software Software Software Name Purpose PHENIX refinement xia2 data scaling xia2 data reduction MOLREP phasing PDB_EXTRACT data extraction