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Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8E5T
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.834 f_angle_d 0.503 f_chiral_restr 0.037 f_plane_restr 0.004 f_bond_d 0.002
Sample Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 443499 Reported Resolution (Å) 2.78 Resolution Method OTHER Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (8E5T) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 51
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 700 Maximum Defocus (nm) 1700 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC PARTICLE SELECTION crYOLO IMAGE ACQUISITION SerialEM CTF CORRECTION cryoSPARC INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC MODEL REFINEMENT ISOLDE MODEL REFINEMENT PHENIX 1.19.1_4122
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION