10SH | pdb_000010sh

The CryoEM structure of T12 type2 nanofiber


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined42.568
r_long_range_B_other42.548
r_mcangle_it29.226
r_mcangle_other29.221
r_scangle_other25.459
r_mcbond_it18.656
r_mcbond_other18.643
r_scbond_it15.287
r_scbond_other15.277
r_dihedral_angle_3_deg12.519
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined42.568
r_long_range_B_other42.548
r_mcangle_it29.226
r_mcangle_other29.221
r_scangle_other25.459
r_mcbond_it18.656
r_mcbond_other18.643
r_scbond_it15.287
r_scbond_other15.277
r_dihedral_angle_3_deg12.519
r_dihedral_angle_2_deg11.126
r_dihedral_angle_1_deg7.612
r_angle_refined_deg1.717
r_angle_other_deg0.788
r_chiral_restr0.077
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_gen_planes_other0.004
r_bond_other_d0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
T12 type2 nanofiber
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles35
Reported Resolution (Å)2.97
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.75
Angular Rotation-0.697
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON I (4k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS TALOS
Minimum Defocus (nm)1200
Maximum Defocus (nm)1800
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION
MODEL REFINEMENTREFMAC5.8.0430
RECONSTRUCTIONServalcat
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING ONLY