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Yeast Blm10 apo Structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.557 f_angle_d 0.592 f_chiral_restr 0.04 f_plane_restr 0.007 f_bond_d 0.004
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details wait time of 8 s, blot time of 12 s and a blot force of 8
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 333883 Reported Resolution (Å) 3.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TFS FALCON 4i (4k x 4k) FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50.253 50.253
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Topaz 0.3.7 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1.14-c7 MODEL FITTING Coot 0.9.8.92 MODEL FITTING ISOLDE 1.10.1_c9 MODEL FITTING UCSF ChimeraX 1.9_rhel9 MODEL REFINEMENT PHENIX 1.21.2-5419 INITIAL EULER ASSIGNMENT cryoSPARC 4.7 FINAL EULER ASSIGNMENT RELION 5.0.1_cu12.2 CLASSIFICATION RELION 5.0.1_cu12.2 RECONSTRUCTION RELION 5.0.1_cu12.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2419467