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SPERM WHALE MYOGLOBIN V68F N-BUTYL ISOCYANIDE AT PH 7.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SPERM WHALE MYOGLOBIN 0M, D122N (DEOXY)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 3.0 M AMMONIUM SULFATE, 20 MM TRIS, 1MM EDTA, PH 9.0, pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.07 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.622 α = 90 b = 91.622 β = 90 c = 45.984 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 292 IMAGE PLATE RIGAKU PINHOLE COLLIMATOR 1997-03-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 6 99 0.098 3.52 6345 27.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.67 2.68 93.9 0.34 3.56
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SPERM WHALE MYOGLOBIN 0M, D122N (DEOXY) 2.67 5 4900 531 90.8 0.124 0.124 0.226 0.225 RANDOM 29.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 19.3 x_scangle_it 12.69 x_scbond_it 11.07 x_mcangle_it 5.92 x_mcbond_it 5.56 x_improper_angle_d 2.51 x_angle_deg 2.2 x_bond_d 0.028 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 19.3 x_scangle_it 12.69 x_scbond_it 11.07 x_mcangle_it 5.92 x_mcbond_it 5.56 x_improper_angle_d 2.51 x_angle_deg 2.2 x_bond_d 0.028 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1229 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 49
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement XDS data reduction XSCALE data scaling X-PLOR phasing