Annotations: 9ZCS

Crystal structure of HOPS subunits Vps33 and Vps16 in complex with the Nyv1 and Vam3 SNARE motifs

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00995	Sec1 family (Sec1)	Sec1 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Small conjugating protein ligase-like protein	catalytic activity ligase activity	localization transport cellular process establishment of localization vesicle-mediated transport	-
B	Vacuolar protein sorting-associated protein 16	cytoskeletal protein binding actin binding protein binding binding	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport vesicle-mediated transport endosomal transport cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport vesicle-mediated transport endosomal transport organelle fusion cellular component organization vacuole fusion organelle organization vacuole organization vacuole fusion, non-autophagic cellular component organization or biogenesis	protein-containing complex cellular anatomical structure membrane membrane protein complex HOPS complex vesicle tethering complex membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle protein-containing complex cellular anatomical structure membrane membrane protein complex HOPS complex vesicle tethering complex membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
D	SNAP receptor-like protein	protein binding binding SNARE binding fusogenic activity SNAP receptor activity protein-macromolecule adaptor activity molecular adaptor activity	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport post-Golgi vesicle-mediated transport vesicle-mediated transport cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport post-Golgi vesicle-mediated transport vesicle-mediated transport Golgi to vacuole transport intercellular transport vacuolar transport Golgi vesicle transport membrane organization membrane fusion organelle membrane fusion vesicle organization cellular component organization organelle fusion organelle organization cellular component organization or biogenesis vesicle fusion	cellular anatomical structure endomembrane system SNARE complex protein-containing complex intracellular anatomical structure membrane membrane protein complex cytoplasm
C	Nyv1 SNARE motif	-	localization transport cellular process establishment of localization vesicle-mediated transport establishment of protein localization protein transport macromolecule localization intracellular protein localization	cellular anatomical structure endomembrane system membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR027482	Sec1-like, domain 2	Homologous Superfamily
A	IPR043127	Sec1-like, domain 3a	Homologous Superfamily
A	IPR016135	Ubiquitin-conjugating enzyme/RWD-like	Homologous Superfamily
A	IPR001619	Sec1-like protein	Family
A	IPR043155	Vacuolar protein sorting-associated protein 33, domain 3b	Homologous Superfamily
A	IPR000608	Ubiquitin-conjugating (UBC), catalytic core domain	Domain
A	IPR043154	Sec1-like, domain 1	Homologous Superfamily
A	IPR036045	Sec1-like superfamily	Homologous Superfamily
B	IPR016534	Vacuolar protein sorting-associated protein 16	Family
B	IPR006925	Vps16, C-terminal	Domain
B	IPR038132	Vps16, C-terminal domain superfamily	Homologous Superfamily
B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR006926	Vps16, N-terminal	Domain
D	IPR006012	Syntaxin/epimorphin, conserved site	Conserved Site
D	IPR000727	Target SNARE coiled-coil homology domain	Domain
D	IPR010989	SNARE	Homologous Superfamily
D	IPR006011	Syntaxin, N-terminal domain	Domain
D	IPR045242	Syntaxin	Family
C	IPR010908	Longin domain	Domain
C	IPR001388	Synaptobrevin-like	Family
C	IPR042855	v-SNARE, coiled-coil homology domain	Domain
C	IPR051097	Synaptobrevin-like vesicular transport protein	Family
C	IPR011012	Longin-like domain superfamily	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9ZCS | pdb_00009zcs

Crystal structure of HOPS subunits Vps33 and Vps16 in complex with the Nyv1 and Vam3 SNARE motifs

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage