9Y49 | pdb_00009y49

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth AV]RVPe9y49AV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
H [auth AA]RVPe9y49AA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
XB [auth CH]RVPe9y49CH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
VB [auth Co]RVPe9y49Co1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
SB [auth Cm]RVPe9y49Cm1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
MB [auth Cg]RVPe9y49Cg1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
LB [auth Cf]RVPe9y49Cf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
EB [auth Ch]RVPe9y49Ch1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
DB [auth Cr]RVPe9y49Cr1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
CB [auth CZ]RVPe9y49CZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
XA [auth CT]RVPe9y49CT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
E [auth AN]RVPe9y49AN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
WA [auth CS]RVPe9y49CS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
UA [auth CQ]RVPe9y49CQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
RA [auth CN]RVPe9y49CN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
QA [auth Ca]RVPe9y49Ca1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
KA [auth AQ]RVPe9y49AQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
IA [auth Af]RVPe9y49Af1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
HA [auth AD]RVPe9y49AD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
GA [auth Ac]RVPe9y49Ac1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
FA [auth AZ]RVPe9y49AZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
EA [auth AT]RVPe9y49AT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
C [auth AO]RVPe9y49AO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
CA [auth AR]RVPe9y49AR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
BA [auth Ad]RVPe9y49Ad1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
AA [auth AS]RVPe9y49AS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
Y [auth AK]RVPe9y49AK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
X [auth AU]RVPe9y49AU1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
W [auth Ag]RVPe9y49Ag1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
V [auth CW]RVPe9y49CW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
T [auth AI]RVPe9y49AI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
S [auth AW]RVPe9y49AW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
R [auth AH]RVPe9y49AH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
Q [auth AG]RVPe9y49AG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
M [auth Ae]RVPe9y49Ae1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
L [auth Ab]RVPe9y49Ab1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
K [auth Aa]RVPe9y49Aa1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
J [auth AY]RVPe9y49AY1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
EC [auth CR]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
EC [auth CR]PF25476Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)Ribosomal protein L19e, C-terminal domainThis domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
JA [auth AF]40S ribosomal protein S5---
I [auth AV]40S ribosomal protein S21---
EC [auth CR]Large ribosomal subunit protein eL19
DC [auth A6]LSU-beta rRNA (2069-MER)---
CC [auth A8]5.8S rRNA (157-MER)---
BC [auth A7]5S rRNA (121-MER)---
H [auth AA]40S ribosomal protein SA---
AC [auth A5]LSU-alpha rRNA (1722-MER)---
ZB [auth CG]60S ribosomal protein L7a---
YB [auth CE]60S ribosomal protein L6---
XB [auth CH]60S ribosomal protein L9---
WB [auth CJ]60S ribosomal protein L11---
VB [auth Co]60S ribosomal protein L36a---
UB [auth Cp]60S ribosomal protein L37a---
TB [auth Cn]60S ribosomal protein L41---
SB [auth Cm]60S ribosomal protein L40---
RB [auth CC]60S ribosomal protein L4---
G [auth AB]40S ribosomal protein S3a---
QB [auth Cl]60S ribosomal protein L39---
PB [auth Ck]60S ribosomal protein L38---
OB [auth Cj]60S ribosomal protein L37---
NB [auth Ci]60S ribosomal protein L36---
MB [auth Cg]60S ribosomal protein L34---
LB [auth Cf]60S ribosomal protein L35a---
KB [auth Ce]60S ribosomal protein L32---
JB [auth Cd]60S ribosomal protein L31---
IB [auth Cc]60S ribosomal protein L30---
HB [auth CF]60S ribosomal protein L7---
F [auth AL]40S ribosomal protein S11---
GB [auth CB]60S ribosomal protein L3---
FB [auth Cb]60S ribosomal protein L29---
EB [auth Ch]60S ribosomal protein L35---
DB [auth Cr]60S ribosomal protein L28---
CB [auth CZ]60S ribosomal protein L27---
BB [auth CY]60S ribosomal protein L26---
AB [auth CX]60S ribosomal protein L23a---
ZA [auth CU]60S ribosomal protein L22---
YA [auth CP]60S ribosomal protein L17---
XA [auth CT]60S ribosomal protein L21---
E [auth AN]40S ribosomal protein S13---
WA [auth CS]60S ribosomal protein L18a---
VA [auth CA]60S ribosomal protein L8---
UA [auth CQ]60S ribosomal protein L18---
TA [auth CD]60S ribosomal protein L5---
SA [auth CI]60S ribosomal protein L10-like---
RA [auth CN]60S ribosomal protein L15---
QA [auth Ca]60S ribosomal protein L27a---
PA [auth CM]60S ribosomal protein L14---
OA [auth CV]60S ribosomal protein L23---
NA [auth CL]60S ribosomal protein L13---
D [auth AX]40S ribosomal protein S23---
MA [auth CO]60S ribosomal protein L13a---
LA [auth Cz]60S ribosomal protein L10a---
KA [auth AQ]40S ribosomal protein S16---
IA [auth Af]40S ribosomal protein S27a---
HA [auth AD]40S ribosomal protein S3---
GA [auth Ac]40S ribosomal protein S28---
FA [auth AZ]40S ribosomal protein S25---
EA [auth AT]40S ribosomal protein S19---
DA [auth AP]40S ribosomal protein S15---
C [auth AO]40S ribosomal protein S14---
CA [auth AR]40S ribosomal protein S17---
BA [auth Ad]40S ribosomal protein S29---
AA [auth AS]40S ribosomal protein S18---
Z [auth AM]40S ribosomal protein S12---
Y [auth AK]40S ribosomal protein S10---
X [auth AU]40S ribosomal protein S20---
W [auth Ag]Guanine nucleotide-binding protein subunit beta-2-like 1---
V [auth CW]60S ribosomal protein L24---
U [auth B2]18S rRNA (1786-MER)---
T [auth AI]40S ribosomal protein S8---
B [auth Ct]Elongation factor 2---
S [auth AW]40S ribosomal protein S15a---
R [auth AH]40S ribosomal protein S7---
Q [auth AG]40S ribosomal protein S6---
P [auth AC]40S ribosomal protein S2---
O [auth AE]40S ribosomal protein S4, X isoform---
N [auth AJ]40S ribosomal protein S9---
M [auth Ae]40S ribosomal protein S30---
L [auth Ab]40S ribosomal protein S27---
K [auth Aa]40S ribosomal protein S26---
J [auth AY]40S ribosomal protein S24---
A [auth tR]tRNA (77-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
EC [auth CR]IPR039547Large ribosomal subunit protein eL19Family
EC [auth CR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
EC [auth CR]IPR057260Ribosomal protein L19e, C-terminal domainDomain
EC [auth CR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
EC [auth CR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
EC [auth CR]IPR057259Ribosomal protein L19e, N-terminal domainDomain
EC [auth CR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
EC [auth CR]IPR000196Large ribosomal subunit protein eL19 domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth Ct]DDE Parent Component: HIS

:  AA0040

:  2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049