9Y49 | pdb_00009y49

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth AV]	RVP	e9y49AV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
H [auth AA]	RVP	e9y49AA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
ZB [auth CG]	PH_14	e9y49CG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
XB [auth CH]	RVP	e9y49CH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
VB [auth Co]	RVP	e9y49Co1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
SB [auth Cm]	RVP	e9y49Cm1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
NB [auth Ci]	PH_14	e9y49Ci1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
MB [auth Cg]	RVP	e9y49Cg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
LB [auth Cf]	RVP	e9y49Cf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
JB [auth Cd]	PH_14	e9y49Cd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
HB [auth CF]	PH_14	e9y49CF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
F [auth AL]	PH_14	e9y49AL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
EB [auth Ch]	RVP	e9y49Ch1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
DB [auth Cr]	RVP	e9y49Cr1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
CB [auth CZ]	RVP	e9y49CZ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
AB [auth CX]	PH_14	e9y49CX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
XA [auth CT]	RVP	e9y49CT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
E [auth AN]	RVP	e9y49AN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
WA [auth CS]	RVP	e9y49CS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
UA [auth CQ]	RVP	e9y49CQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
RA [auth CN]	RVP	e9y49CN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
QA [auth Ca]	RVP	e9y49Ca1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
PA [auth CM]	PH_14	e9y49CM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
KA [auth AQ]	RVP	e9y49AQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
IA [auth Af]	RVP	e9y49Af1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
HA [auth AD]	RVP	e9y49AD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
GA [auth Ac]	RVP	e9y49Ac1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
FA [auth AZ]	RVP	e9y49AZ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
EA [auth AT]	RVP	e9y49AT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
C [auth AO]	RVP	e9y49AO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
CA [auth AR]	RVP	e9y49AR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
BA [auth Ad]	RVP	e9y49Ad1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
AA [auth AS]	RVP	e9y49AS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
Y [auth AK]	RVP	e9y49AK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
X [auth AU]	RVP	e9y49AU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
W [auth Ag]	RVP	e9y49Ag1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
V [auth CW]	RVP	e9y49CW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
T [auth AI]	RVP	e9y49AI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
B [auth Ct]	PH_14	e9y49Ct1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
S [auth AW]	RVP	e9y49AW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
R [auth AH]	RVP	e9y49AH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
Q [auth AG]	RVP	e9y49AG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
O [auth AE]	PH_14	e9y49AE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: PH_14	ECOD (v295.2)
M [auth Ae]	RVP	e9y49Ae1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
L [auth Ab]	RVP	e9y49Ab1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
K [auth Aa]	RVP	e9y49Aa1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)
J [auth AY]	RVP	e9y49AY1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVP	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
EC [auth CR]	PF01280	Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)	Ribosomal protein L19e, N-terminal domain	This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology.	Domain
EC [auth CR]	PF25476	Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)	Ribosomal protein L19e, C-terminal domain	This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth AV]	40S ribosomal protein S21	-	-	-
EC [auth CR]	Large ribosomal subunit protein eL19	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen synapse cell junction protein-containing complex ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome cytoplasm cytosol large ribosomal subunit
DC [auth A6]	LSU-beta rRNA (2069-MER)	-	-	-
CC [auth A8]	5.8S rRNA (157-MER)	-	-	-
BC [auth A7]	5S rRNA (121-MER)	-	-	-
H [auth AA]	40S ribosomal protein SA	-	-	-
AC [auth A5]	LSU-alpha rRNA (1722-MER)	-	-	-
ZB [auth CG]	60S ribosomal protein L7a	-	-	-
YB [auth CE]	60S ribosomal protein L6	-	-	-
XB [auth CH]	60S ribosomal protein L9	-	-	-
WB [auth CJ]	60S ribosomal protein L11	-	-	-
VB [auth Co]	60S ribosomal protein L36a	-	-	-
UB [auth Cp]	60S ribosomal protein L37a	-	-	-
TB [auth Cn]	60S ribosomal protein L41	-	-	-
SB [auth Cm]	60S ribosomal protein L40	-	-	-
RB [auth CC]	60S ribosomal protein L4	-	-	-
G [auth AB]	40S ribosomal protein S3a	-	-	-
QB [auth Cl]	60S ribosomal protein L39	-	-	-
PB [auth Ck]	60S ribosomal protein L38	-	-	-
OB [auth Cj]	60S ribosomal protein L37	-	-	-
NB [auth Ci]	60S ribosomal protein L36	-	-	-
MB [auth Cg]	60S ribosomal protein L34	-	-	-
LB [auth Cf]	60S ribosomal protein L35a	-	-	-
KB [auth Ce]	60S ribosomal protein L32	-	-	-
JB [auth Cd]	60S ribosomal protein L31	-	-	-
IB [auth Cc]	60S ribosomal protein L30	-	-	-
HB [auth CF]	60S ribosomal protein L7	-	-	-
F [auth AL]	40S ribosomal protein S11	-	-	-
GB [auth CB]	60S ribosomal protein L3	-	-	-
FB [auth Cb]	60S ribosomal protein L29	-	-	-
EB [auth Ch]	60S ribosomal protein L35	-	-	-
DB [auth Cr]	60S ribosomal protein L28	-	-	-
CB [auth CZ]	60S ribosomal protein L27	-	-	-
BB [auth CY]	60S ribosomal protein L26	-	-	-
AB [auth CX]	60S ribosomal protein L23a	-	-	-
ZA [auth CU]	60S ribosomal protein L22	-	-	-
YA [auth CP]	60S ribosomal protein L17	-	-	-
XA [auth CT]	60S ribosomal protein L21	-	-	-
E [auth AN]	40S ribosomal protein S13	-	-	-
WA [auth CS]	60S ribosomal protein L18a	-	-	-
VA [auth CA]	60S ribosomal protein L8	-	-	-
UA [auth CQ]	60S ribosomal protein L18	-	-	-
TA [auth CD]	60S ribosomal protein L5	-	-	-
SA [auth CI]	60S ribosomal protein L10-like	-	-	-
RA [auth CN]	60S ribosomal protein L15	-	-	-
QA [auth Ca]	60S ribosomal protein L27a	-	-	-
PA [auth CM]	60S ribosomal protein L14	-	-	-
OA [auth CV]	60S ribosomal protein L23	-	-	-
NA [auth CL]	60S ribosomal protein L13	-	-	-
D [auth AX]	40S ribosomal protein S23	-	-	-
MA [auth CO]	60S ribosomal protein L13a	-	-	-
LA [auth Cz]	60S ribosomal protein L10a	-	-	-
KA [auth AQ]	40S ribosomal protein S16	-	-	-
JA [auth AF]	40S ribosomal protein S5	-	-	-
IA [auth Af]	40S ribosomal protein S27a	-	-	-
HA [auth AD]	40S ribosomal protein S3	-	-	-
GA [auth Ac]	40S ribosomal protein S28	-	-	-
FA [auth AZ]	40S ribosomal protein S25	-	-	-
EA [auth AT]	40S ribosomal protein S19	-	-	-
DA [auth AP]	40S ribosomal protein S15	-	-	-
C [auth AO]	40S ribosomal protein S14	-	-	-
CA [auth AR]	40S ribosomal protein S17	-	-	-
BA [auth Ad]	40S ribosomal protein S29	-	-	-
AA [auth AS]	40S ribosomal protein S18	-	-	-
Z [auth AM]	40S ribosomal protein S12	-	-	-
Y [auth AK]	40S ribosomal protein S10	-	-	-
X [auth AU]	40S ribosomal protein S20	-	-	-
W [auth Ag]	Guanine nucleotide-binding protein subunit beta-2-like 1	-	-	-
V [auth CW]	60S ribosomal protein L24	-	-	-
U [auth B2]	18S rRNA (1786-MER)	-	-	-
T [auth AI]	40S ribosomal protein S8	-	-	-
B [auth Ct]	Elongation factor 2	-	-	-
S [auth AW]	40S ribosomal protein S15a	-	-	-
R [auth AH]	40S ribosomal protein S7	-	-	-
Q [auth AG]	40S ribosomal protein S6	-	-	-
P [auth AC]	40S ribosomal protein S2	-	-	-
O [auth AE]	40S ribosomal protein S4, X isoform	-	-	-
N [auth AJ]	40S ribosomal protein S9	-	-	-
M [auth Ae]	40S ribosomal protein S30	-	-	-
L [auth Ab]	40S ribosomal protein S27	-	-	-
K [auth Aa]	40S ribosomal protein S26	-	-	-
J [auth AY]	40S ribosomal protein S24	-	-	-
A [auth tR]	tRNA (77-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
EC [auth CR]	IPR039547	Large ribosomal subunit protein eL19	Family
EC [auth CR]	IPR023638	Large ribosomal subunit protein eL19, conserved site	Conserved Site
EC [auth CR]	IPR057260	Ribosomal protein L19e, C-terminal domain	Domain
EC [auth CR]	IPR033935	Large ribosomal subunit protein eL19, eukaryotic	Domain
EC [auth CR]	IPR015972	Large ribosomal subunit protein eL19, domain 1	Homologous Superfamily
EC [auth CR]	IPR057259	Ribosomal protein L19e, N-terminal domain	Domain
EC [auth CR]	IPR035970	Large ribosomal subunit protein eL19 superfamily	Homologous Superfamily
EC [auth CR]	IPR000196	Large ribosomal subunit protein eL19 domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth Ct]	DDE	Parent Component: HIS : AA0040 : 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.