9ROT | pdb_00009rot

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]28S ribosomal protein S34, mitochondrial
B [auth 1]28S ribosomal protein S35, mitochondrial
C [auth 3]Aurora kinase A-interacting protein-
D [auth B]28S ribosomal protein S2, mitochondrial
E [auth C]28S ribosomal protein S24, mitochondrial
F [auth E]28S ribosomal protein S6, mitochondrial
G [auth F]28S ribosomal protein S7, mitochondrial
28S ribosomal protein S10, mitochondrial-
28S ribosomal protein S11, mitochondrial
J [auth K]28S ribosomal protein S14, mitochondrial
K [auth L]28S ribosomal protein S15, mitochondrial
L [auth M]28S ribosomal protein S16, mitochondrial
M [auth N]28S ribosomal protein S17, mitochondrial
N [auth O]28S ribosomal protein S18b, mitochondrial
O [auth P]28S ribosomal protein S18c, mitochondrial
P [auth Q]Small ribosomal subunit protein bS21m
Q [auth R]28S ribosomal protein S22, mitochondrial
R [auth S]28S ribosomal protein S23, mitochondrial
S [auth T]28S ribosomal protein S25, mitochondrial
T [auth U]28S ribosomal protein S26, mitochondrial
U [auth W]28S ribosomal protein S28, mitochondrial
V [auth X]28S ribosomal protein S29, mitochondrial
W [auth Y]28S ribosomal protein S31, mitochondrial
X [auth Z]28S ribosomal protein S33, mitochondrial
Y [auth D]28S ribosomal protein S5, mitochondrial
Z [auth G]28S ribosomal protein S9, mitochondrial
AA [auth J]28S ribosomal protein S12, mitochondrial
BA [auth V]28S ribosomal protein S27, mitochondrial
CA [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
DA [auth b]12S rRNA N4-methylcytidine (m4C) methyltransferase
EA [auth A]12S mitochondrial rRNA---
FA [auth 7]Translation initiation factor IF-2, mitochondrial
GA [auth a]Putative ribosome-binding factor A, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR032053Small ribosomal subunit protein mS34Family
B [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
B [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
C [auth 3]IPR013177Ribosomal protein bS22, C-terminalDomain
D [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
D [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
D [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
D [auth B]IPR001865Small ribosomal subunit protein uS2Family
E [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
F [auth E]IPR000529Small ribosomal subunit protein bS6Family
F [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth F]IPR000235Small ribosomal subunit protein uS7Family
G [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR040055Small ribosomal subunit protein uS10mFamily
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IPR001971Small ribosomal subunit protein uS11Family
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
J [auth K]IPR001209Small ribosomal subunit protein uS14Family
K [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
K [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
K [auth L]IPR052137Universal small ribosomal subunit uS15Family
K [auth L]IPR000589Small ribosomal subunit protein uS15Family
L [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
L [auth M]IPR000307Small ribosomal subunit protein bS16Family
M [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
M [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth N]IPR000266Small ribosomal subunit protein uS17Family
N [auth O]IPR040054Small ribosomal subunit protein mS40Family
N [auth O]IPR001648Small ribosomal subunit protein bS18Family
N [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
O [auth P]IPR001648Small ribosomal subunit protein bS18Family
O [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
O [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
P [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
P [auth Q]IPR001911Small ribosomal subunit protein bS21Family
Q [auth R]IPR019374Small ribosomal subunit protein mS22Family
R [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
R [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
R [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
S [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
S [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
S [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
T [auth U]IPR026140Small ribosomal subunit protein mS26Family
U [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
V [auth X]IPR019368Small ribosomal subunit protein mS29Family
V [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
V [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
W [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
X [auth Z]IPR013219Small ribosomal subunit protein mS33Family
Y [auth D]IPR000851Small ribosomal subunit protein uS5Family
Y [auth D]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
Y [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
Y [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
Y [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
Y [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Z [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Z [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
Z [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Z [auth G]IPR000754Small ribosomal subunit protein uS9Family
Z [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
AA [auth J]IPR006032Small ribosomal subunit protein uS12Family
AA [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
AA [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
BA [auth V]IPR002885Pentatricopeptide repeatRepeat
BA [auth V]IPR019266Small ribosomal subunit protein mS27Family
BA [auth V]IPR034913mS27/PTCD2Family
CA [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
CA [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
CA [auth 4]IPR002885Pentatricopeptide repeatRepeat
CA [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
DA [auth b]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
DA [auth b]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
DA [auth b]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
FA [auth 7]IPR005225Small GTP-binding domainDomain
FA [auth 7]IPR000178Translation initiation factor IF-2, bacterial-likeFamily
FA [auth 7]IPR000795Translational (tr)-type GTP-binding domainDomain
FA [auth 7]IPR053905Elongation factor G-like, domain IIDomain
FA [auth 7]IPR044145Translation initiation factor IF-2, domain IIDomain
FA [auth 7]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
FA [auth 7]IPR015760Translation initiation factor IF- 2Family
FA [auth 7]IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
FA [auth 7]IPR023115Translation initiation factor IF- 2, domain 3Domain
FA [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GA [auth a]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
GA [auth a]IPR039212Ribosome-binding factor A, mitochondrialFamily
GA [auth a]IPR020053Ribosome-binding factor A, conserved siteConserved Site
GA [auth a]IPR023799Ribosome-binding factor A domain superfamilyHomologous Superfamily
GA [auth a]IPR000238Ribosome-binding factor AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth 0]P82930
B [auth 1]P82673
C [auth 3]Q9NWT8
D [auth B]Q9Y399
F [auth E]P82932
G [auth F]Q9Y2R9
P82664
P82912
J [auth K]O60783
K [auth L]P82914
L [auth M]Q9Y3D3
M [auth N]Q9Y2R5
N [auth O]Q9Y676
O [auth P]Q9Y3D5
P [auth Q]P82921
Q [auth R]P82650
R [auth S]Q9Y3D9
S [auth T]P82663
U [auth W]Q9Y2Q9
V [auth X]P51398
W [auth Y]Q92665
X [auth Z]Q9Y291
Y [auth D]P82675
Z [auth G]P82933
AA [auth J]O15235
BA [auth V]Q92552
CA [auth 4]Q96EY7
DA [auth b]A6NJ78
FA [auth 7]P46199
GA [auth a]Q8N0V3

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
5F0
P [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
EA [auth A]MA6 Parent Component: A

AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354