9ROT | pdb_00009rot

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
28S ribosomal protein S11, mitochondrial
28S ribosomal protein S10, mitochondrial-
G [auth F]28S ribosomal protein S7, mitochondrial
F [auth E]28S ribosomal protein S6, mitochondrial
E [auth C]28S ribosomal protein S24, mitochondrial
D [auth B]28S ribosomal protein S2, mitochondrial
GA [auth a]Putative ribosome-binding factor A, mitochondrial
FA [auth 7]Translation initiation factor IF-2, mitochondrial
EA [auth A]12S mitochondrial rRNA---
DA [auth b]12S rRNA N4-methylcytidine (m4C) methyltransferase
C [auth 3]Aurora kinase A-interacting protein-
CA [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
BA [auth V]28S ribosomal protein S27, mitochondrial
AA [auth J]28S ribosomal protein S12, mitochondrial
Z [auth G]28S ribosomal protein S9, mitochondrial
Y [auth D]28S ribosomal protein S5, mitochondrial
X [auth Z]28S ribosomal protein S33, mitochondrial
W [auth Y]28S ribosomal protein S31, mitochondrial
V [auth X]28S ribosomal protein S29, mitochondrial
U [auth W]28S ribosomal protein S28, mitochondrial
T [auth U]28S ribosomal protein S26, mitochondrial
B [auth 1]28S ribosomal protein S35, mitochondrial
S [auth T]28S ribosomal protein S25, mitochondrial
R [auth S]28S ribosomal protein S23, mitochondrial
Q [auth R]28S ribosomal protein S22, mitochondrial
P [auth Q]Small ribosomal subunit protein bS21m
O [auth P]28S ribosomal protein S18c, mitochondrial
N [auth O]28S ribosomal protein S18b, mitochondrial
M [auth N]28S ribosomal protein S17, mitochondrial
L [auth M]28S ribosomal protein S16, mitochondrial
K [auth L]28S ribosomal protein S15, mitochondrial
J [auth K]28S ribosomal protein S14, mitochondrial
A [auth 0]28S ribosomal protein S34, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001971Small ribosomal subunit protein uS11Family
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR040055Small ribosomal subunit protein uS10mFamily
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
G [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth F]IPR000235Small ribosomal subunit protein uS7Family
G [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth E]IPR000529Small ribosomal subunit protein bS6Family
F [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
E [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
D [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
D [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
D [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
D [auth B]IPR001865Small ribosomal subunit protein uS2Family
GA [auth a]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
GA [auth a]IPR039212Ribosome-binding factor A, mitochondrialFamily
GA [auth a]IPR020053Ribosome-binding factor A, conserved siteConserved Site
GA [auth a]IPR023799Ribosome-binding factor A domain superfamilyHomologous Superfamily
GA [auth a]IPR000238Ribosome-binding factor AFamily
FA [auth 7]IPR005225Small GTP-binding domainDomain
FA [auth 7]IPR000178Translation initiation factor IF-2, bacterial-likeFamily
FA [auth 7]IPR000795Translational (tr)-type GTP-binding domainDomain
FA [auth 7]IPR053905Elongation factor G-like, domain IIDomain
FA [auth 7]IPR044145Translation initiation factor IF-2, domain IIDomain
FA [auth 7]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
FA [auth 7]IPR015760Translation initiation factor IF- 2Family
FA [auth 7]IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
FA [auth 7]IPR023115Translation initiation factor IF- 2, domain 3Domain
FA [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DA [auth b]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
DA [auth b]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
DA [auth b]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
C [auth 3]IPR013177Ribosomal protein bS22, C-terminalDomain
CA [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
CA [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
CA [auth 4]IPR002885Pentatricopeptide repeatRepeat
CA [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
BA [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
BA [auth V]IPR002885Pentatricopeptide repeatRepeat
BA [auth V]IPR019266Small ribosomal subunit protein mS27Family
BA [auth V]IPR034913mS27/PTCD2Family
AA [auth J]IPR006032Small ribosomal subunit protein uS12Family
AA [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
AA [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Z [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Z [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
Z [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Z [auth G]IPR000754Small ribosomal subunit protein uS9Family
Z [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Y [auth D]IPR000851Small ribosomal subunit protein uS5Family
Y [auth D]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
Y [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
Y [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
Y [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
Y [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
X [auth Z]IPR013219Small ribosomal subunit protein mS33Family
W [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
V [auth X]IPR019368Small ribosomal subunit protein mS29Family
V [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
V [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
T [auth U]IPR026140Small ribosomal subunit protein mS26Family
B [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
B [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
S [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
S [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
S [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
R [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
R [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
R [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
Q [auth R]IPR019374Small ribosomal subunit protein mS22Family
P [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
P [auth Q]IPR001911Small ribosomal subunit protein bS21Family
O [auth P]IPR001648Small ribosomal subunit protein bS18Family
O [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
O [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
N [auth O]IPR040054Small ribosomal subunit protein mS40Family
N [auth O]IPR001648Small ribosomal subunit protein bS18Family
N [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
M [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
M [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth N]IPR000266Small ribosomal subunit protein uS17Family
L [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
L [auth M]IPR000307Small ribosomal subunit protein bS16Family
K [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
K [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
K [auth L]IPR052137Universal small ribosomal subunit uS15Family
K [auth L]IPR000589Small ribosomal subunit protein uS15Family
J [auth K]IPR001209Small ribosomal subunit protein uS14Family
A [auth 0]IPR032053Small ribosomal subunit protein mS34Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
P82912
P82664
G [auth F]Q9Y2R9
F [auth E]P82932
D [auth B]Q9Y399
GA [auth a]Q8N0V3
FA [auth 7]P46199
DA [auth b]A6NJ78
C [auth 3]Q9NWT8
CA [auth 4]Q96EY7
BA [auth V]Q92552
AA [auth J]O15235
Z [auth G]P82933
Y [auth D]P82675
X [auth Z]Q9Y291
W [auth Y]Q92665
V [auth X]P51398
U [auth W]Q9Y2Q9
B [auth 1]P82673
S [auth T]P82663
R [auth S]Q9Y3D9
Q [auth R]P82650
P [auth Q]P82921
O [auth P]Q9Y3D5
N [auth O]Q9Y676
M [auth N]Q9Y2R5
L [auth M]Q9Y3D3
K [auth L]P82914
J [auth K]O60783
A [auth 0]P82930

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
5F0
EA [auth A]MA6 Parent Component: A

P [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359