Annotations: 9NPY

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth U]	RVP	e9npyU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
H [auth T]	RVP	e9npyT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
G [auth S]	RVP	e9npyS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
F [auth R]	RVP	e9npyR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
E [auth Q]	RVP	e9npyQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
D [auth O]	RVP	e9npyO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
C [auth L]	RVP	e9npyL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
B [auth J]	RVP	e9npyJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
P [auth g]	RVP	e9npyg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
O [auth E]	RVP	e9npyE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
M [auth d]	RVP	e9npyd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
L [auth c]	RVP	e9npyc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
K [auth b]	RVP	e9npyb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
J [auth Y]	RVP	e9npyY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
A [auth B]	RVP	e9npyB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth U]	IPR001848	Small ribosomal subunit protein uS10	Family
I [auth U]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
I [auth U]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
I [auth U]	IPR005729	Small ribosomal subunit protein uS10, eukaryotic/archaeal	Family
I [auth U]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
H [auth T]	IPR001266	Small ribosomal subunit protein eS19	Family
H [auth T]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
H [auth T]	IPR018277	Small ribosomal subunit protein eS19, conserved site	Conserved Site
H [auth T]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
G [auth S]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
G [auth S]	IPR001892	Small ribosomal subunit protein uS13	Family
G [auth S]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
G [auth S]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
F [auth R]	IPR036401	Small ribosomal subunit protein eS17 superfamily	Homologous Superfamily
F [auth R]	IPR001210	Small ribosomal subunit protein eS17	Family
F [auth R]	IPR018273	Small ribosomal subunit protein eS17, conserved site	Conserved Site
E [auth Q]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
E [auth Q]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth Q]	IPR000754	Small ribosomal subunit protein uS9	Family
E [auth Q]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
D [auth O]	IPR002222	Small ribosomal subunit protein uS19	Family
D [auth O]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
D [auth O]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
D [auth O]	IPR005713	Small ribosomal subunit protein uS19, eukaryota/archaea	Family
C [auth L]	IPR000530	Small ribosomal subunit protein eS12	Family
C [auth L]	IPR004038	Ribosomal protein eL8/eL30/eS12/Gadd45	Domain
C [auth L]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
C [auth L]	IPR047860	Small ribosomal subunit protein eS12, conserved site	Conserved Site
B [auth J]	IPR037447	Small ribosomal subunit protein eS10	Family
B [auth J]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B [auth J]	IPR005326	Plectin/eS10, N-terminal	Domain
P [auth g]	IPR045223	Small ribosomal subunit protein RACK1-like	Family
P [auth g]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
P [auth g]	IPR001680	WD40 repeat	Repeat
P [auth g]	IPR019775	WD40 repeat, conserved site	Conserved Site
P [auth g]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
P [auth g]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
O [auth E]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
O [auth E]	IPR000235	Small ribosomal subunit protein uS7	Family
O [auth E]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
O [auth E]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
O [auth E]	IPR005716	Ribosomal protein uS7, eukaryotic/archaeal	Family
M [auth d]	IPR001209	Small ribosomal subunit protein uS14	Family
M [auth d]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
M [auth d]	IPR039744	Small ribosomal subunit protein uS14, eukaryotes/archaea	Family
M [auth d]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
L [auth c]	IPR028626	Ribosomal protein eS28 conserved site	Conserved Site
L [auth c]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
L [auth c]	IPR000289	Small ribosomal subunit protein eS28	Family
K [auth b]	IPR002906	Small ribosomal subunit protein eS31	Domain
K [auth b]	IPR019956	Ubiquitin domain	Domain
K [auth b]	IPR019954	Ubiquitin conserved site	Conserved Site
K [auth b]	IPR050158	Ubiquitin and ubiquitin-like	Family
K [auth b]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
K [auth b]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
K [auth b]	IPR000626	Ubiquitin-like domain	Domain
K [auth b]	IPR038582	Small ribosomal subunit protein eS31 eukaryotic superfamily	Homologous Superfamily
J [auth Y]	IPR004977	Small ribosomal subunit protein eS25	Family
J [auth Y]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth B]	IPR004044	K Homology domain, type 2	Domain
A [auth B]	IPR005703	Small ribosomal subunit protein uS3, eukaryota/archaeal	Family
A [auth B]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
A [auth B]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
A [auth B]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
A [auth B]	IPR057258	Small ribosomal subunit protein uS3	Family
A [auth B]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
A [auth B]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site

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9NPY | pdb_00009npy

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage