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 9H19 | pdb_00009h19

Cryo-EM structure of RC-dLH complex model I from Gem. groenlandica strain TET16


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZB [auth AT]PAD_Ne9h19AT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
YA [auth AG]PAD_Ne9h19AG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
XB [auth AS]PAD_Ne9h19AS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
XA [auth AF]PAD_Ne9h19AF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
VB [auth AR]PAD_Ne9h19AR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
UA [auth AE]PAD_Ne9h19AE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
TA [auth AD]Cry1Ac_D5e9h19AD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Cry1Ac_D5ECOD (v295.2)
SB [auth AQ]PAD_Ne9h19AQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
RB [auth AP]PAD_Ne9h19AP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
QA [auth AC]PAD_Ne9h19AC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
PA [auth AB]PAD_Ne9h19AB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
OB [auth AO]PAD_Ne9h19AO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
NB [auth AN]PAD_Ne9h19AN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
MA [auth AA]PAD_Ne9h19AA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
KB [auth AM]PAD_Ne9h19AM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
IB [auth AL]PAD_Ne9h19AL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
GC [auth AX]PAD_Ne9h19AX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
GB [auth AK]PAD_Ne9h19AK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
EC [auth AW]PAD_Ne9h19AW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
EB [auth AJ]PAD_Ne9h19AJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CC [auth AV]PAD_Ne9h19AV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CB [auth AI]PAD_Ne9h19AI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BC [auth AU]PAD_Ne9h19AU1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
AB [auth AH]PAD_Ne9h19AH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
LA [auth C]PAD_Ne9h19C1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
KA [auth K]PAD_Ne9h19K1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
IA [auth M]PAD_Ne9h19M1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
HA [auth L]RVT_1e9h19L1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVT_1ECOD (v295.2)
ZA [auth BG]PAD_Ne9h19BG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
Z [auth Bm]PAD_Ne9h19Bm1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
YB [auth BT]PAD_Ne9h19BT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
X [auth Bl]PAD_Ne9h19Bl1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
WB [auth BS]PAD_Ne9h19BS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
WA [auth BF]PAD_Ne9h19BF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
VA [auth BE]PAD_Ne9h19BE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
V [auth Bk]PAD_Ne9h19Bk1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
UB [auth BR]PAD_Ne9h19BR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
TB [auth BQ]PAD_Ne9h19BQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
T [auth Bj]PAD_Ne9h19Bj1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
SA [auth BD]PAD_Ne9h19BD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
RA [auth BC]PAD_Ne9h19BC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
R [auth Bi]PAD_Ne9h19Bi1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
QB [auth BP]PAD_Ne9h19BP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
PB [auth BO]PAD_Ne9h19BO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
P [auth Bh]PAD_Ne9h19Bh1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
OA [auth BB]PAD_Ne9h19BB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
NA [auth BA]PAD_Ne9h19BA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
N [auth Bg]PAD_Ne9h19Bg1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
MB [auth BN]PAD_Ne9h19BN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
LB [auth BM]PAD_Ne9h19BM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
L [auth Bf]PAD_Ne9h19Bf1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
JB [auth BL]PAD_Ne9h19BL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
J [auth Be]PAD_Ne9h19Be1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
HC [auth BX]PAD_Ne9h19BX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
HB [auth BK]PAD_Ne9h19BK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
H [auth Bd]PAD_Ne9h19Bd1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
FC [auth BW]PAD_Ne9h19BW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
FB [auth BJ]PAD_Ne9h19BJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
FA [auth Bp]PAD_Ne9h19Bp1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
F [auth Bc]PAD_Ne9h19Bc1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
DC [auth BV]Cry1Ac_D5e9h19BV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Cry1Ac_D5ECOD (v295.2)
DB [auth BI]PAD_Ne9h19BI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
DA [auth Bo]PAD_Ne9h19Bo1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
D [auth Bb]PAD_Ne9h19Bb1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BB [auth BH]PAD_Ne9h19BH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BA [auth Bn]PAD_Ne9h19Bn1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
B [auth Ba]PAD_Ne9h19Ba1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
AC [auth BU]PAD_Ne9h19BU1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
Y [auth Am]PAD_Ne9h19Am1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
W [auth Al]PAD_Ne9h19Al1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
U [auth Ak]PAD_Ne9h19Ak1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
S [auth Aj]PAD_Ne9h19Aj1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
Q [auth Ai]PAD_Ne9h19Ai1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
O [auth Ah]PAD_Ne9h19Ah1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
M [auth Ag]PAD_Ne9h19Ag1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
K [auth Af]PAD_Ne9h19Af1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
I [auth Ae]Cry1Ac_D5e9h19Ae1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Cry1Ac_D5ECOD (v295.2)
G [auth Ad]PAD_Ne9h19Ad1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
EA [auth Ap]PAD_Ne9h19Ap1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
E [auth Ac]PAD_Ne9h19Ac1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
CA [auth Ao]PAD_Ne9h19Ao1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
C [auth Ab]PAD_Ne9h19Ab1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
AA [auth An]PAD_Ne9h19An1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
A [auth Aa]PAD_Ne9h19Aa1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
LA [auth C]PF02276Photosynthetic reaction centre cytochrome C subunit (CytoC_RC)Photosynthetic reaction centre cytochrome C subunit- Family
IA [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
HA [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Light-harvesting protein-
LA [auth C]Photosynthetic reaction center cytochrome c subunit
KA [auth K]reaction centre Hc sub unit---
JA [auth H]reaction centre Ht sub unit---
IA [auth M]Reaction center protein M chain-
HA [auth L]Reaction center protein L chain-
GA [auth S]reaction centre S sub unit- - -
Light-harvesting protein-
Light-harvesting protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR035889Light-harvesting complexHomologous Superfamily
LA [auth C]IPR036280Multiheme cytochrome superfamilyHomologous Superfamily
LA [auth C]IPR023119Multihaem cytochrome, PRC subunit superfamilyHomologous Superfamily
LA [auth C]IPR003158Photosynthetic reaction centre, cytochrome c subunitFamily
IA [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IA [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
IA [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
IA [auth M]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
HA [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
HA [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
HA [auth L]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
HA [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily