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 9YWB | pdb_00009ywb

Hypomethylated nucleoplasmic pre-60S intermediate containing Nog2 at Rsa4-arrested 5S post-rotation state


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth d]60S ribosomal protein L31-A
H [auth c]60S ribosomal protein L30
G [auth C]60S ribosomal protein L4-A
F [auth b]Nucleolar GTP-binding protein 1
DB [auth Lr]Small ribosomal subunit protein eS32A
CB [auth q]Nuclear GTP-binding protein NUG1
BB [auth s]Large ribosomal subunit protein uL1A
AB [auth o]Ribosome biogenesis protein ALB1- -
ZA [auth 4]Probable metalloprotease ARX1-
YA [auth n]Pre-rRNA-processing protein IPI1-
XA [auth t]Protein SDA1-
E [auth B]60S ribosomal protein L3
WA [auth 2]5S rRNA---
VA [auth m]Nucleolar GTP-binding protein 2
UA [auth x]Ribosome assembly protein 4-
TA [auth 5]rRNA-processing protein CGR1-
SA [auth 3]5.8S rRNA---
RA [auth 1]25S ribosomal RNA---
QA [auth K]60S ribosomal protein L12---
PA [auth z]UPF0642 protein YBL028C- -
OA [auth Z]60S ribosomal protein L27-A
NA [auth y]Eukaryotic translation initiation factor 6
D [auth a]60S ribosomal protein L28
MA [auth Y]60S ribosomal protein L26-A
LA [auth X]60S ribosomal protein L25
KA [auth W]Ribosome assembly factor MRT4
JA [auth V]60S ribosomal protein L23-A
IA [auth U]60S ribosomal protein L22-A
HA [auth T]60S ribosomal protein L21-A
GA [auth S]Large ribosomal subunit protein eL20A
FA [auth r]Ribosome biogenesis protein NSA2-
EA [auth R]60S ribosomal protein L19-A
DA [auth Q]60S ribosomal protein L18-A
C [auth A]60S ribosomal protein L2-A
CA [auth P]60S ribosomal protein L17-A
BA [auth O]Large ribosomal subunit protein uL13A
AA [auth u]Ribosome biogenesis protein RLP24
Z [auth N]Large ribosomal subunit protein eL15A
Y [auth p]60S ribosomal protein L43-A
X [auth M]60S ribosomal protein L14-A
W [auth l]60S ribosomal protein L39
V [auth L]60S ribosomal protein L13-A
U [auth k]60S ribosomal protein L38
T [auth j]60S ribosomal protein L37-A
B [auth J]60S ribosomal protein L11-A
S [auth i]60S ribosomal protein L36-A
R [auth h]60S ribosomal protein L35-A
Q [auth H]Large ribosomal subunit protein uL6A
P [auth I]Bud site selection protein 20
O [auth g]60S ribosomal protein L34-A
N [auth G]Large ribosomal subunit protein eL8A
M [auth f]60S ribosomal protein L33-A
L [auth F]60S ribosomal protein L7-A
K [auth e]60S ribosomal protein L32
J [auth E]60S ribosomal protein L6-A
A [auth D]60S ribosomal protein L5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
I [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
I [auth d]IPR000054Large ribosomal subunit protein eL31Family
H [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
H [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
H [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
H [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
G [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth C]IPR002136Large ribosomal subunit protein uL4Family
G [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
G [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
G [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth b]IPR024926Nucleolar GTP-binding protein 1Family
F [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
F [auth b]IPR012973NOG, C-terminalDomain
F [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
F [auth b]IPR041623NOG1, N-terminal helical domainDomain
F [auth b]IPR006073GTP binding domainDomain
F [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DB [auth Lr]IPR007836Large ribosomal subunit protein eS32Family
CB [auth q]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
CB [auth q]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
CB [auth q]IPR006073GTP binding domainDomain
CB [auth q]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
CB [auth q]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
CB [auth q]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BB [auth s]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
BB [auth s]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
BB [auth s]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
BB [auth s]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
BB [auth s]IPR002143Large ribosomal subunit protein uL1Family
BB [auth s]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
AB [auth o]IPR022784Ribosome biogenesis protein Alb1Family
ZA [auth 4]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
ZA [auth 4]IPR047113Proliferation-associated protein 2G4/ARX1Family
ZA [auth 4]IPR036005Creatinase/aminopeptidase-likeHomologous Superfamily
YA [auth n]IPR024679Pre-rRNA-processing protein Ipi1, N-terminalDomain
YA [auth n]IPR011989Armadillo-like helicalHomologous Superfamily
YA [auth n]IPR016024Armadillo-type foldHomologous Superfamily
XA [auth t]IPR048292SDA1, C-terminal domainDomain
XA [auth t]IPR016024Armadillo-type foldHomologous Superfamily
XA [auth t]IPR007949SDA1, middle domainDomain
XA [auth t]IPR027312Sda1Family
XA [auth t]IPR012977SDA1, N-terminalDomain
E [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth B]IPR000597Large ribosomal subunit protein uL3Family
E [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
E [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
VA [auth m]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
VA [auth m]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
VA [auth m]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
VA [auth m]IPR006073GTP binding domainDomain
VA [auth m]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
VA [auth m]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
VA [auth m]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
UA [auth x]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
UA [auth x]IPR001680WD40 repeatRepeat
UA [auth x]IPR019775WD40 repeat, conserved siteConserved Site
UA [auth x]IPR012972NLEDomain
UA [auth x]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
UA [auth x]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
TA [auth 5]IPR005579Cgr1-likeFamily
PA [auth z]IPR019434Domain of unknown function DUF2423Domain
OA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
OA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
OA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
OA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
NA [auth y]IPR002769Translation initiation factor IF6Family
D [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
D [auth a]IPR030878Large ribosomal subunit protein uL15Family
D [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
D [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
MA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
MA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
MA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth Y]IPR005824KOWDomain
MA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
LA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
LA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
LA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
LA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
KA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
KA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
KA [auth W]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
KA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
KA [auth W]IPR033867Ribosome assembly factor Mrt4Family
JA [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
JA [auth V]IPR000218Large ribosomal subunit protein uL14Family
JA [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IA [auth U]IPR002671Large ribosomal subunit protein eL22Family
IA [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
HA [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
HA [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
HA [auth T]IPR001147Large ribosomal subunit protein eL21Family
HA [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth S]IPR028877Large ribosomal subunit protein eL20Family
GA [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
GA [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
FA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
FA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
EA [auth R]IPR039547Large ribosomal subunit protein eL19Family
EA [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
EA [auth R]IPR057260Ribosomal protein L19e, C-terminal domainDomain
EA [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
EA [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
EA [auth R]IPR057259Ribosomal protein L19e, N-terminal domainDomain
EA [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
EA [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
DA [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
DA [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
DA [auth Q]IPR000039Large ribosomal subunit protein eL18Family
DA [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
C [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth A]IPR002171Large ribosomal subunit protein uL2Family
CA [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
CA [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
CA [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
CA [auth P]IPR001063Large ribosomal subunit protein uL22Family
BA [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
BA [auth O]IPR005822Large ribosomal subunit protein uL13Family
BA [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
BA [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
AA [auth u]IPR011017TRASH domainDomain
AA [auth u]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
AA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
AA [auth u]IPR056366Large ribosomal subunit protein eL24Family
Z [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Z [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Z [auth N]IPR000439Large ribosomal subunit protein eL15Family
Y [auth p]IPR002674Large ribosomal subunit protein eL43Family
Y [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
Y [auth p]IPR050522Eukaryotic ribosomal protein eL43Family
X [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth M]IPR039660Large ribosomal subunit protein eL14Family
X [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
X [auth M]IPR005824KOWDomain
W [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
W [auth l]IPR000077Large ribosomal subunit protein eL39Family
W [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
V [auth L]IPR001380Large ribosomal subunit protein eL13Family
V [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
U [auth k]IPR002675Large ribosomal subunit protein eL38Family
U [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
T [auth j]IPR001569Large ribosomal subunit protein eL37Family
T [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
T [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
T [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
B [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
B [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
B [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
B [auth J]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
B [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
B [auth J]IPR002132Large ribosomal subunit protein uL5Family
S [auth i]IPR000509Large ribosomal subunit protein eL36Family
S [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
R [auth h]IPR001854Large ribosomal subunit protein uL29Family
R [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
R [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
R [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
Q [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
Q [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
Q [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
Q [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
P [auth I]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
P [auth I]IPR051879C2H2-type Zinc Finger Maturation ProteinFamily
P [auth I]IPR013087Zinc finger C2H2-typeDomain
P [auth I]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
P [auth I]IPR022755Zinc finger, double-stranded RNA bindingDomain
O [auth g]IPR008195Large ribosomal subunit protein eL34Family
O [auth g]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
O [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
N [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
N [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
N [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
N [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
N [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
M [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
M [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
M [auth f]IPR001780Large ribosomal subunit protein eL33Family
M [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
L [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
L [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
L [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
L [auth F]IPR039699Large ribosomal subunit protein uL30Family
L [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
L [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
L [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
K [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
K [auth e]IPR001515Large ribosomal subunit protein eL32Family
K [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
J [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
J [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
J [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth E]IPR000915Large ribosomal subunit protein eL6Family
A [auth D]IPR057268Large ribosomal subunit protein uL18Family
A [auth D]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
A [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain