9YG5 | pdb_00009yg5

VPS13A/Ct-XKR1

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D]	PF09815	XK-related protein (XK-related)	XK-related protein	-	Family
B	PF25037	Intermembrane lipid transfer protein VPS13, C-terminal (VPS13_C)	Intermembrane lipid transfer protein VPS13, C-terminal	This entry represents the C-terminal PH-like domain from VPS13 which weakly binds to phosphatidylinositol 4,5-bisphosphate and contributes to membrane recruitment [1-3]. Truncation of this domain in VPS13A are causative for chorea-acanthocytosis, whi ...	This entry represents the C-terminal PH-like domain from VPS13 which weakly binds to phosphatidylinositol 4,5-bisphosphate and contributes to membrane recruitment [1-3]. Truncation of this domain in VPS13A are causative for chorea-acanthocytosis, which suggests that it plays an important function [1].	Domain
B	PF25033	VPS13-like family middle region (VPS13_M)	VPS13-like family middle region	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D]	Endoplasmic reticulum membrane adapter protein XK	protein-macromolecule adaptor activity molecular adaptor activity	amino acid transport localization transport establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane
B	Intermembrane lipid transfer protein VPS13A	-	localization transport macromolecule localization lipid localization lipid transport establishment of localization catabolic process autophagy cellular process metabolic process process utilizing autophagic mechanism establishment of protein localization cellular localization protein targeting localization transport macromolecule localization lipid localization lipid transport establishment of localization catabolic process autophagy cellular process metabolic process process utilizing autophagic mechanism establishment of protein localization cellular localization protein targeting establishment of protein localization to vacuole intracellular transport protein localization to vacuole establishment of protein localization to organelle protein transport establishment of localization in cell protein localization to organelle vacuolar transport intracellular protein localization protein targeting to vacuole intracellular protein transport protein catabolic process in the vacuole lysosomal protein catabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process maintenance of protein location protein localization to Golgi apparatus maintenance of location maintenance of location in cell maintenance of protein location in cell protein retention in Golgi apparatus Golgi to endosome transport post-Golgi vesicle-mediated transport vesicle-mediated transport intercellular transport cytosolic transport Golgi vesicle transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle membrane contact site mitochondria-associated endoplasmic reticulum membrane contact site intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen endomembrane system membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle membrane contact site mitochondria-associated endoplasmic reticulum membrane contact site intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen endomembrane system intracellular organelle lumen cytoplasmic vesicle neuronal dense core vesicle lumen vesicle neuronal dense core vesicle vesicle lumen dense core granule secretory granule lumen organelle lumen secretory granule dense core granule lumen secretory vesicle mitochondrial membrane membrane organelle envelope mitochondrial envelope organelle membrane cytosol cell projection sperm midpiece cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane neuron projection vacuolar membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane lysosome Golgi apparatus lipid droplet membraneless organelle intracellular membraneless organelle endosome membrane endosome cytoplasmic vesicle membrane vesicle membrane organelle outer membrane mitochondrial outer membrane outer membrane somatodendritic compartment cell body neuronal cell body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D]	IPR018629	XK-related protein	Family
A [auth D]	IPR051773	XK-related membrane adapter	Family
B	IPR056748	Intermembrane lipid transfer protein VPS13-like, C-terminal	Domain
B	IPR026854	Vacuolar protein sorting-associated protein 13, N-terminal domain	Domain
B	IPR056747	VPS13-like, middle region	Domain
B	IPR026847	Vacuolar protein sorting-associated protein 13	Family
B	IPR009543	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D]	: P51811	McLeod neuroacanthocytosis syndrome neuroacanthocytosis peripheral nervous system disease neuromuscular disease peripheral neuropathy hematologic disease McLeod syndrome chorea-acanthocytosis subependymal giant cell astrocytoma large cell medulloblastoma ulcerative colitis malignant ependymoma astrocytic tumor pancreatic intraductal papillary-mucinous carcinoma endometriosis McLeod neuroacanthocytosis syndrome neuroacanthocytosis peripheral nervous system disease neuromuscular disease peripheral neuropathy hematologic disease McLeod syndrome chorea-acanthocytosis subependymal giant cell astrocytoma large cell medulloblastoma ulcerative colitis malignant ependymoma astrocytic tumor pancreatic intraductal papillary-mucinous carcinoma endometriosis pilocytic astrocytoma glioblastoma psychiatric disorder intellectual disability transitional cell carcinoma lung cancer malignant glioma medulloblastoma atypical teratoid rhabdoid tumor movement disorder osteosarcoma pancreatic intraductal papillary-mucinous neoplasm gastric cancer primitive neuroectodermal tumor spina bifida interstitial cystitis tuberculosis lung carcinoma malignant pancreatic neoplasm oligodendroglioma ovarian cancer dilated cardiomyopathy pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia exocrine pancreatic carcinoma Pick disease gastric carcinoma psoriasis hepatocellular carcinoma
B	: Q96RL7	chorea-acanthocytosis neuroacanthocytosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor astrocytic tumor Chorea Acanthocytosis Syndrome Cohen syndrome glioblastoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma Parkinson disease ulcerative colitis atypical teratoid rhabdoid tumor chorea-acanthocytosis neuroacanthocytosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor astrocytic tumor Chorea Acanthocytosis Syndrome Cohen syndrome glioblastoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma Parkinson disease ulcerative colitis atypical teratoid rhabdoid tumor colorectal cancer invasive ductal breast carcinoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma breast cancer choreatic disease epilepsy large cell medulloblastoma medulloblastoma neurodegenerative disease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.