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 9YDB | pdb_00009ydb

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
25S RNA---
5S RNA---
8S RNA---
D [auth z]Cytoplasmic 60S subunit biogenesis factor REH1
F [auth LE]60S ribosomal protein L3
G [auth LF]60S ribosomal protein L4-A
J [auth LI]60S ribosomal protein L7-A
L [auth LK]60S ribosomal protein L9-A
N [auth LM]Large ribosomal subunit protein uL5B
O [auth LN]60S ribosomal protein L13-A
P [auth LO]60S ribosomal protein L14-A
Q [auth LP]60S ribosomal protein L15-A
R [auth LQ]60S ribosomal protein L16-A
S [auth LR]60S ribosomal protein L17-A
U [auth LT]60S ribosomal protein L19-A
W [auth LV]60S ribosomal protein L21-A
X [auth LW]60S ribosomal protein L22-A
Y [auth LX]60S ribosomal protein L23-A
Z [auth LY]60S ribosomal protein L24-A
AA [auth LZ]60S ribosomal protein L25
BA [auth La]60S ribosomal protein L26-A
DA [auth Lc]60S ribosomal protein L28
EA [auth Ld]60S ribosomal protein L29
FA [auth Le]60S ribosomal protein L30
GA [auth Lf]60S ribosomal protein L31-A
HA [auth Lg]60S ribosomal protein L32
IA [auth Lh]60S ribosomal protein L33-A
JA [auth Li]60S ribosomal protein L34-A
KA [auth Lj]60S ribosomal protein L35-A
LA [auth Lk]60S ribosomal protein L36-A
MA [auth Ll]60S ribosomal protein L37-A
NA [auth Lm]60S ribosomal protein L38
OA [auth Ln]60S ribosomal protein L39
PA [auth Lo]Ubiquitin-60S ribosomal protein L40
QA [auth Lq]60S ribosomal protein L42-A
RA [auth Lr]60S ribosomal protein L43-A
SA [auth X]Eukaryotic translation initiation factor 6
UA [auth V]60S ribosomal export protein NMD3
I [auth LH]Large ribosomal subunit protein eL6B
H [auth LG]60S ribosomal protein L5
E [auth LD]60S ribosomal protein L2-A
TA [auth W]Large subunit GTPase 1
CA [auth Lb]60S ribosomal protein L27-A
V [auth LU]60S ribosomal protein L20-A
T [auth LS]60S ribosomal protein L18-A
M [auth LL]Large ribosomal subunit protein uL16
K [auth LJ]60S ribosomal protein L8-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth z]IPR040025Zinc finger protein 622/Rei1/Reh1Family
D [auth z]IPR041661ZN622/Rei1/Reh1, zinc finger C2H2-typeDomain
F [auth LE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth LE]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
F [auth LE]IPR000597Large ribosomal subunit protein uL3Family
F [auth LE]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
F [auth LE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth LF]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth LF]IPR002136Large ribosomal subunit protein uL4Family
G [auth LF]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
G [auth LF]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
G [auth LF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
J [auth LI]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth LI]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
J [auth LI]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
J [auth LI]IPR039699Large ribosomal subunit protein uL30Family
J [auth LI]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
J [auth LI]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
J [auth LI]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
L [auth LK]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth LK]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
L [auth LK]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth LK]IPR000702Large ribosomal subunit protein uL6-likeFamily
N [auth LM]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
N [auth LM]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
N [auth LM]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
N [auth LM]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
N [auth LM]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
N [auth LM]IPR002132Large ribosomal subunit protein uL5Family
O [auth LN]IPR001380Large ribosomal subunit protein eL13Family
O [auth LN]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
P [auth LO]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
P [auth LO]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth LO]IPR039660Large ribosomal subunit protein eL14Family
P [auth LO]IPR002784Large ribosomal subunit protein eL14 domainDomain
P [auth LO]IPR005824KOWDomain
Q [auth LP]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth LP]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Q [auth LP]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Q [auth LP]IPR000439Large ribosomal subunit protein eL15Family
R [auth LQ]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
R [auth LQ]IPR005822Large ribosomal subunit protein uL13Family
R [auth LQ]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
R [auth LQ]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
S [auth LR]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth LR]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
S [auth LR]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth LR]IPR001063Large ribosomal subunit protein uL22Family
U [auth LT]IPR039547Large ribosomal subunit protein eL19Family
U [auth LT]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
U [auth LT]IPR057260Ribosomal protein L19e, C-terminal domainDomain
U [auth LT]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
U [auth LT]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
U [auth LT]IPR057259Ribosomal protein L19e, N-terminal domainDomain
U [auth LT]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
U [auth LT]IPR000196Large ribosomal subunit protein eL19 domainDomain
W [auth LV]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
W [auth LV]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth LV]IPR001147Large ribosomal subunit protein eL21Family
W [auth LV]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth LW]IPR002671Large ribosomal subunit protein eL22Family
X [auth LW]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Y [auth LX]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Y [auth LX]IPR000218Large ribosomal subunit protein uL14Family
Y [auth LX]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Z [auth LY]IPR056366Large ribosomal subunit protein eL24Family
Z [auth LY]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
Z [auth LY]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
Z [auth LY]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
AA [auth LZ]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
AA [auth LZ]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth LZ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
AA [auth LZ]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
AA [auth LZ]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
BA [auth La]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
BA [auth La]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
BA [auth La]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth La]IPR005824KOWDomain
BA [auth La]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth La]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
DA [auth Lc]IPR021131Large ribosomal subunit protein uL15/eL18Domain
DA [auth Lc]IPR030878Large ribosomal subunit protein uL15Family
DA [auth Lc]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
DA [auth Lc]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
EA [auth Ld]IPR002673Large ribosomal subunit protein eL29Family
FA [auth Le]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
FA [auth Le]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
FA [auth Le]IPR039109Large ribosomal subunit protein eL30-likeFamily
FA [auth Le]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GA [auth Lf]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
GA [auth Lf]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
GA [auth Lf]IPR000054Large ribosomal subunit protein eL31Family
HA [auth Lg]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
HA [auth Lg]IPR001515Large ribosomal subunit protein eL32Family
HA [auth Lg]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
IA [auth Lh]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
IA [auth Lh]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IA [auth Lh]IPR001780Large ribosomal subunit protein eL33Family
IA [auth Lh]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
JA [auth Li]IPR008195Large ribosomal subunit protein eL34Family
JA [auth Li]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
JA [auth Li]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
KA [auth Lj]IPR001854Large ribosomal subunit protein uL29Family
KA [auth Lj]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
KA [auth Lj]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
KA [auth Lj]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
LA [auth Lk]IPR000509Large ribosomal subunit protein eL36Family
LA [auth Lk]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
MA [auth Ll]IPR001569Large ribosomal subunit protein eL37Family
MA [auth Ll]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
MA [auth Ll]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth Ll]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
NA [auth Lm]IPR002675Large ribosomal subunit protein eL38Family
NA [auth Lm]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
OA [auth Ln]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
OA [auth Ln]IPR000077Large ribosomal subunit protein eL39Family
OA [auth Ln]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
PA [auth Lo]IPR019954Ubiquitin conserved siteConserved Site
PA [auth Lo]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
PA [auth Lo]IPR000626Ubiquitin-like domainDomain
PA [auth Lo]IPR019956Ubiquitin domainDomain
PA [auth Lo]IPR050158Ubiquitin and ubiquitin-likeFamily
PA [auth Lo]IPR001975Large ribosomal subunit protein eL40 domainDomain
PA [auth Lo]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
QA [auth Lq]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
QA [auth Lq]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth Lq]IPR000552Large ribosomal subunit protein eL42Family
RA [auth Lr]IPR002674Large ribosomal subunit protein eL43Family
RA [auth Lr]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth Lr]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
RA [auth Lr]IPR050522Eukaryotic ribosomal protein eL43Family
SA [auth X]IPR002769Translation initiation factor IF6Family
UA [auth V]IPR063586NMD3-like, N-terminal domainDomain
UA [auth V]IPR007064Nmd3, N-terminalDomain
UA [auth V]IPR039768Ribosomal export protein Nmd3Family
UA [auth V]IPR04889960S ribosomal export protein NMD3, SH3 domainDomain
UA [auth V]IPR04889860S ribosomal export protein NMD3, OB-fold domainDomain
I [auth LH]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
I [auth LH]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth LH]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
I [auth LH]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth LH]IPR000915Large ribosomal subunit protein eL6Family
H [auth LG]IPR057268Large ribosomal subunit protein uL18Family
H [auth LG]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
H [auth LG]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
E [auth LD]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
E [auth LD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth LD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth LD]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
E [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth LD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
E [auth LD]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
E [auth LD]IPR002171Large ribosomal subunit protein uL2Family
TA [auth W]IPR043358Ras GTPase GNL1-likeFamily
TA [auth W]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
TA [auth W]IPR006073GTP binding domainDomain
TA [auth W]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
CA [auth Lb]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
CA [auth Lb]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
CA [auth Lb]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth Lb]IPR001141Large ribosomal subunit protein eL27Family
CA [auth Lb]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
V [auth LU]IPR028877Large ribosomal subunit protein eL20Family
V [auth LU]IPR023573Large ribosomal subunit protein eL20 domainDomain
V [auth LU]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
T [auth LS]IPR021131Large ribosomal subunit protein uL15/eL18Domain
T [auth LS]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
T [auth LS]IPR000039Large ribosomal subunit protein eL18Family
T [auth LS]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
M [auth LL]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth LL]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
M [auth LL]IPR047873Large ribosomal subunit protein uL16Family
M [auth LL]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
M [auth LL]IPR016180Large ribosomal subunit protein uL16 domainDomain
K [auth LJ]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
K [auth LJ]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
K [auth LJ]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
K [auth LJ]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
K [auth LJ]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
K [auth LJ]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily