9Y60 | pdb_00009y60

Crystal structure of NSD2 PWWP1 domain in complex with (6R)-6-(3,5-dichlorophenyl)morpholin-3-one (ligand 2)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Histone-lysine N-methyltransferase NSD2	protein-lysine N-methyltransferase activity histone H4 methyltransferase activity histone H4K20 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups transferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity methyltransferase activity catalytic activity protein-lysine N-methyltransferase activity histone H4 methyltransferase activity histone H4K20 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups transferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity methyltransferase activity catalytic activity histone H3 methyltransferase activity chromatin binding binding histone H3K36 dimethyltransferase activity histone H3K36 methyltransferase activity sequence-specific DNA binding DNA binding nucleic acid binding histone H3K36 trimethyltransferase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	methylation metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process methylation metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process macromolecule metabolic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA metabolic process cellular response to stress DNA damage response response to stress DNA repair	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm nucleoplasm chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR006560	AWS domain	Domain
A	IPR001965	Zinc finger, PHD-type	Domain
A	IPR046341	SET domain superfamily	Homologous Superfamily
A	IPR047441	Nuclear SET domain-containing protein 2, third PHD finger	Domain
A	IPR055197	Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger	Domain
A	IPR001214	SET domain	Domain
A	IPR000313	PWWP domain	Domain
A	IPR041306	NSD, Cys-His rich domain	Domain
A	IPR047426	Histone-lysine N-methyltransferase NSD1 / NSD2, first PHD finger	Domain
A	IPR050777	SET2 Histone-Lysine N-Methyltransferase	Family
A	IPR019787	Zinc finger, PHD-finger	Domain
A	IPR047442	Nuclear SET domain-containing protein 2, fifth PHD finger	Domain
A	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A	IPR003616	Post-SET domain	Domain
A	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
A	IPR055198	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger	Domain
A	IPR047443	Nuclear SET domain-containing protein 2, HMG box	Domain
A	IPR047434	Nuclear SET domain-containing protein 2, first PWWP domain	Domain
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR047437	Nuclear SET domain-containing protein 2, SET domain	Domain
A	IPR047439	Nuclear SET domain-containing protein 2, second PHD finger	Domain
A	IPR047435	Nuclear SET domain-containing protein 2, second PWWP domain	Domain
A	IPR059153	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1	Domain
A	IPR001841	Zinc finger, RING-type	Domain
A	IPR009071	High mobility group box domain	Domain
A	IPR036910	High mobility group box domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: O96028	Wolf-Hirschhorn syndrome breast carcinoma breast cancer Malignant neoplasm of breast medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma adrenal cortex carcinoma pituitary cancer bone marrow disease primitive neuroectodermal tumor cancer ductal breast carcinoma in situ invasive ductal breast carcinoma lung adenocarcinoma Wolf-Hirschhorn syndrome breast carcinoma breast cancer Malignant neoplasm of breast medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma adrenal cortex carcinoma pituitary cancer bone marrow disease primitive neuroectodermal tumor cancer ductal breast carcinoma in situ invasive ductal breast carcinoma lung adenocarcinoma malignant glioma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm atopic eczema subependymal giant cell astrocytoma gastric carcinoma large cell medulloblastoma lung cancer malignant mesothelioma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pilocytic astrocytoma atypical teratoid rhabdoid tumor childhood acute lymphoblastic leukemia glioblastoma malignant ependymoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.