9XPS | pdb_00009xps

The neck structure of the Phage Phikz

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF24215	Phage head to tail associated domain (H_T_assoc)	Phage head to tail associated domain	This entry represents a protein domain that is found associated with phage head to tail connector domains Pfam:PF24214, which suggests this domain is part of the phage structure. This region forms a large mainly alpha helical domain.	Domain
A, B	PF24214	Putative phage head-tail joining protein (Phage_H_T_join_2)	Putative phage head-tail joining protein	This entry represents a putative phage head to tail joining protein.	Domain
O [auth S]	PF01464	Transglycosylase SLT domain (SLT)	Transglycosylase SLT domain	This family is distantly related to Pfam:PF00062. Members are found in phages, type II, type III and type IV secretion systems (reviewed in [4]).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	PHIKZ099	-	-	-
C [auth x]	PHIKZ029	-	-	-
D [auth y], E [auth z]	PHIKZ030	-	-	-
F [auth w]	PHIKZ098	-	-	-
G [auth 1], H [auth 3], I [auth 5], J [auth 6], K [auth 4], G [auth 1], H [auth 3], I [auth 5], J [auth 6], K [auth 4], L [auth 7], M [auth 8], N [auth 2]	PHIKZ034	-	-	-
O [auth S]	Endolysin gp144	peptidoglycan lytic transglycosylase activity peptidoglycan muralytic activity lyase activity catalytic activity carbon-oxygen lyase activity, acting on polysaccharides carbon-oxygen lyase activity	defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus symbiont-mediated cytolysis of host cell viral life cycle disruption of cell in another organism cytolysis defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus symbiont-mediated cytolysis of host cell viral life cycle disruption of cell in another organism cytolysis biological process involved in interaction with host biological process involved in symbiotic interaction viral release from host cell by cytolysis exit from host cell viral process cytolysis in another organism cellular process viral release from host cell disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR057114	Putative phage head-tail joining protein, C-terminal domain	Domain
A, B	IPR057113	Putative phage head-tail joining protein, N-terminal domain	Domain
C [auth x]	IPR048712	Tail sheath protein gp29, gp29PR	Domain
D [auth y], E [auth z]	IPR057119	Phage tail tube protein 14	Family
O [auth S]	IPR002477	Peptidoglycan binding-like	Domain
O [auth S]	IPR036365	PGBD-like superfamily	Homologous Superfamily
O [auth S]	IPR036366	PGBD superfamily	Homologous Superfamily
O [auth S]	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
O [auth S]	IPR008258	Transglycosylase SLT domain 1	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.