Annotations: 9XMM

Cryo-EM structure of Integrin alpha V beta 6 complex with a bicyclic inhibitory peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Integrin alpha N-terminal domain	8041564	3000314	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01839	FG-GAP repeat (FG-GAP)	FG-GAP repeat	-	Repeat
A	PF08441	Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1)	Integrin alpha Ig-like domain 1	This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Integrin alpha-V heavy chain	molecular transducer activity coreceptor activity signaling receptor activity protein binding binding extracellular matrix protein binding fibronectin binding opsonin binding cation binding ion binding metal ion binding small molecule binding virus receptor activity exogenous protein binding molecular transducer activity coreceptor activity signaling receptor activity protein binding binding extracellular matrix protein binding fibronectin binding opsonin binding cation binding ion binding metal ion binding small molecule binding virus receptor activity exogenous protein binding extracellular matrix binding enzyme binding protease binding transforming growth factor beta binding growth factor binding cytokine binding cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding kinase binding protein kinase C binding protein kinase binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle entry into host cell by a symbiont-containing vacuole biological process involved in interaction with host biological process involved in symbiotic interaction regulation of localization regulation of biological process negative regulation of lipid transport transport regulation of transport biological regulation biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle entry into host cell by a symbiont-containing vacuole biological process involved in interaction with host biological process involved in symbiotic interaction regulation of localization regulation of biological process negative regulation of lipid transport transport regulation of transport biological regulation negative regulation of biological process lipid localization lipid transport negative regulation of transport regulation of lipid transport establishment of localization negative regulation of lipid localization localization regulation of lipid localization macromolecule localization cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion cellular process multicellular organismal process biosynthetic process cytokine production metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process transforming growth factor beta production cell migration cell motility regulation of cellular process lipid storage regulation of lipid storage negative regulation of lipid storage negative regulation of cellular process nutrient storage monoatomic ion transmembrane transport calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport cellular response to stimulus signal transduction in absence of ligand response to stimulus cell surface receptor signaling pathway signaling cell death extrinsic apoptotic signaling pathway cell communication apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand signal transduction apoptotic process programmed cell death cell population proliferation positive regulation of cell population proliferation positive regulation of osteoblast proliferation positive regulation of biological process osteoblast proliferation regulation of cell population proliferation regulation of osteoblast proliferation positive regulation of cellular process regulation of plasma lipoprotein particle levels regulation of low-density lipoprotein particle clearance negative regulation of low-density lipoprotein particle clearance plasma lipoprotein particle clearance negative regulation of lipoprotein particle clearance regulation of lipoprotein particle clearance regulation of multicellular organismal process low-density lipoprotein particle clearance negative regulation of multicellular organismal process import into cell regulation of cellular component organization regulation of phagocytosis regulation of vesicle-mediated transport vesicle-mediated transport cellular component organization phagocytosis cellular component organization or biogenesis endocytosis regulation of endocytosis positive regulation of cell communication regulation of signaling positive regulation of signal transduction positive regulation of intracellular signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication positive regulation of signaling developmental process wound healing epithelium development morphogenesis of an epithelium epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis anatomical structure morphogenesis response to stress anatomical structure development epiboly wound healing, spreading of cells response to wounding chemotaxis negative chemotaxis taxis response to chemical response to external stimulus locomotion negative regulation of signaling regulation of programmed cell death negative regulation of cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic process regulation of apoptotic signaling pathway negative regulation of lipoprotein metabolic process regulation of protein metabolic process lipoprotein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process regulation of lipoprotein metabolic process protein metabolic process regulation of metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process heterotypic cell-cell adhesion cell-cell adhesion apoptotic cell clearance modulation by symbiont of entry into host negative regulation of entry of bacterium into host cell entry of bacterium into host cell regulation of entry of bacterium into host cell regulation of biological process involved in symbiotic interaction cell-matrix adhesion regulation of developmental process cellular developmental process negative regulation of developmental process macrophage derived foam cell differentiation regulation of cell differentiation negative regulation of macrophage derived foam cell differentiation foam cell differentiation cell differentiation regulation of macrophage derived foam cell differentiation negative regulation of cell differentiation positive regulation of cytosolic calcium ion concentration regulation of biological quality blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development system development apolipoprotein A-I-mediated signaling pathway intracellular signaling cassette MAPK cascade ERK1 and ERK2 cascade formation of primary germ layer embryonic morphogenesis embryo development gastrulation endoderm development endoderm formation endodermal cell differentiation integrin-mediated signaling pathway cell adhesion mediated by integrin positive regulation of cell adhesion regulation of cell adhesion vasculogenesis positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction positive regulation of small GTPase mediated signal transduction	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule cell periphery protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex alphav-beta3 integrin-PKCalpha complex cell surface external side of plasma membrane side of membrane integrin alphav-beta5 complex integrin complex plasma membrane signaling receptor complex signaling receptor complex protein complex involved in cell adhesion integrin alphav-beta8 complex extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle cytosol intracellular membraneless organelle actin cytoskeleton plasma membrane bounded cell projection cell projection actin-based cell projection cytoskeleton membraneless organelle plasma membrane region microvillus microvillus membrane cell projection membrane alphav-beta3 integrin-HMGB1 complex alphav-beta3 integrin-IGF-1-IGF1R complex integrin alphav-beta3 complex anchoring junction cell junction focal adhesion cell-substrate junction ruffle cell leading edge leading edge membrane ruffle membrane phagocytic vesicle endocytic vesicle integrin alphav-beta1 complex lamellipodium membrane lamellipodium integrin alphav-beta6 complex filopodium membrane filopodium
B	Integrin beta-6	protein binding binding virus receptor activity exogenous protein binding cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding molecular function activator activity molecular function regulator activity cation binding ion binding metal ion binding small molecule binding	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process phospholipid homeostasis chemical homeostasis homeostatic process lipid homeostasis multicellular organismal process multicellular organismal-level homeostasis multicellular organismal-level chemical homeostasis surfactant homeostasis immunological memory formation process cellular developmental process cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process phospholipid homeostasis chemical homeostasis homeostatic process lipid homeostasis multicellular organismal process multicellular organismal-level homeostasis multicellular organismal-level chemical homeostasis surfactant homeostasis immunological memory formation process cellular developmental process response to stimulus cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation cell activation involved in immune response leukocyte activation memory T cell differentiation T cell activation involved in immune response T cell activation cell differentiation leukocyte activation involved in immune response anatomical structure development T cell differentiation lymphocyte activation involved in immune response developmental process immune response hemopoiesis cell activation T cell differentiation involved in immune response immune effector process immune system process immunological memory process leukocyte differentiation enamel mineralization tooth mineralization odontogenesis of dentin-containing tooth odontogenesis animal organ development amelogenesis tissue development anatomical structure morphogenesis anatomical structure formation involved in morphogenesis animal organ morphogenesis biomineral tissue development skin development multicellular organism development skeletal system development bone development system development cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway signaling biological regulation cell communication signal transduction response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus hard palate development secondary palate development roof of mouth development biosynthetic process cytokine production metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process transforming growth factor beta production cell adhesion mediated by integrin cell migration cell motility myeloid leukocyte differentiation myeloid dendritic cell activation Langerhans cell differentiation myeloid leukocyte activation myeloid cell differentiation myeloid dendritic cell differentiation dendritic cell differentiation cell morphogenesis wound healing response to stress response to wounding biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus defense response inflammatory response cell-cell adhesion tube development respiratory tube development bronchiole development lung development respiratory system development lung alveolus development cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway enzyme-linked receptor protein signaling pathway	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane protein-containing complex plasma membrane protein complex membrane protein complex cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane protein-containing complex plasma membrane protein complex membrane protein complex integrin complex plasma membrane signaling receptor complex signaling receptor complex protein complex involved in cell adhesion integrin alphav-beta6 complex
C [auth E]	ALA-TRP-ARG-GLY-ASP-CHG-CYS-ASN-PRO	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013517	FG-GAP repeat	Repeat
A	IPR048286	Integrin alpha, third immunoglobulin-like domain	Domain
A	IPR013649	Integrin alpha, first immunoglubulin-like domain	Domain
A	IPR048285	Integrin alpha, second immunoglobulin-like domain	Domain
A	IPR032695	Integrin domain superfamily	Homologous Superfamily
A	IPR013519	Integrin alpha beta-propellor	Repeat
A	IPR000413	Integrin alpha chain	Family
A	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
A	IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Conserved Site
B	IPR033760	Integrin beta N-terminal	Domain
B	IPR015812	Integrin beta subunit	Family
B	IPR036349	Integrin beta tail domain superfamily	Homologous Superfamily
B	IPR057243	Integrins beta, I-EGF domain, conserved site	Conserved Site
B	IPR002369	Integrin beta subunit, VWA domain	Domain
B	IPR014836	Integrin beta subunit, cytoplasmic domain	Domain
B	IPR016201	PSI domain	Domain
B	IPR040622	Integrin beta, epidermal growth factor-like domain 1	Domain
B	IPR012896	Integrin beta subunit, tail	Domain
B	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
B	IPR013111	Epidermal growth factor-like domain, extracellular	Domain
B	IPR057073	Integrin beta, epidermal growth factor-like domain 2	Domain
B	IPR032695	Integrin domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P06756	Acute Cerebrovascular Accidents glioblastoma intracerebral hemorrhage myopathy osteosarcoma rheumatoid arthritis breast cancer cerebrovascular disorder hereditary spastic paraplegia large cell medulloblastoma nasopharyngeal carcinoma ovarian cancer tuberculosis diabetes mellitus inflammatory bowel disease Acute Cerebrovascular Accidents glioblastoma intracerebral hemorrhage myopathy osteosarcoma rheumatoid arthritis breast cancer cerebrovascular disorder hereditary spastic paraplegia large cell medulloblastoma nasopharyngeal carcinoma ovarian cancer tuberculosis diabetes mellitus inflammatory bowel disease medulloblastoma non-small cell lung carcinoma pilocytic astrocytoma
B	: P18564	amelogenesis imperfecta amelogenesis imperfecta type 1H Liver Cirrhosis, Experimental autoimmune disease liver disease cholangitis pulmonary emphysema intellectual disability limb-girdle muscular dystrophy lung carcinoma membranous glomerulonephritis non-small cell lung carcinoma atypical teratoid rhabdoid tumor pancreatic ductal adenocarcinoma breast cancer amelogenesis imperfecta amelogenesis imperfecta type 1H Liver Cirrhosis, Experimental autoimmune disease liver disease cholangitis pulmonary emphysema intellectual disability limb-girdle muscular dystrophy lung carcinoma membranous glomerulonephritis non-small cell lung carcinoma atypical teratoid rhabdoid tumor pancreatic ductal adenocarcinoma breast cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia chronic hepatitis C virus infection ductal breast carcinoma in situ glioblastoma hereditary spastic paraplegia interstitial cystitis lung adenocarcinoma malignant glioma myopathy ovarian cancer pancreatic intraductal papillary-mucinous carcinoma dermatomyositis Emery-Dreifuss muscular dystrophy head and neck cancer inflammatory bowel disease large cell medulloblastoma lung cancer malignant pancreatic neoplasm nasopharyngeal carcinoma Becker muscular dystrophy pancreatic intraductal papillary-mucinous neoplasm Duchenne muscular dystrophy