9X3R | pdb_00009x3r

Phage T4 peripheral baseplate in post-tail-contraction state (genome-full particle)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LSCOP2B SuperfamilyBaseplate structural protein gp11 8037280 3001519 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyBaseplate structural protein gp11 8037280 3001519 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyBaseplate structural protein gp11 8037280 3001519 SCOP2B (2022-06-29)
FSCOP2B Superfamilygp9 8041251 3000227 SCOP2B (2022-06-29)
ESCOP2B Superfamilygp9 8041251 3000227 SCOP2B (2022-06-29)
DSCOP2B Superfamilygp9 8041251 3000227 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyBaseplate structural protein gp8 8033088 3002009 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyBaseplate structural protein gp8 8033088 3002009 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G, H, I
PF22670Baseplate wedge protein gp10 domain 3 (Gp10_D3)Baseplate wedge protein gp10 domain 3This domain is found in Baseplate wedge protein gp10 and related proteins. This domain folds into a beta-sandwich. Domain
G, H, I
PF07880Bacteriophage T4 gp9/10-like protein, N-terminal (T4_gp9_10_N)Bacteriophage T4 gp9/10-like protein, N-terminalThis entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment t ...This entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment to a host cell. The protein is active as a trimer, with each monomer being composed of three domains. The N-terminal domain consists of an extended polypeptide chain and two alpha helices. The alpha1 helix from each of the three monomers in the trimer interacts with its counterparts to form a coiled-coil structure. The middle domain is a seven-stranded beta-sandwich. This entry represents the region including these two domains. Noticeably, the long flexible region between N-terminal and middle domains may be required for the function of gp9 to transmit signals from the long tail fibres [2]. Together with gp11, gp10 initiates the assembly of wedges that then go on to associate with a hub to form the viral baseplate [1].
Domain
G, H, I
PF21939Baseplate structural protein Gp10, C-terminal domain (Gp10_C)Baseplate structural protein Gp10, C-terminal domainThis entry represents the C-terminal domain (CTD) of baseplate structural protein Gp10 that assembles into trimeric structures. The core structure and assembly of Gp10 has structural similarity to that of the head domain of Gp11 and the receptor bind ...This entry represents the C-terminal domain (CTD) of baseplate structural protein Gp10 that assembles into trimeric structures. The core structure and assembly of Gp10 has structural similarity to that of the head domain of Gp11 and the receptor binding domain of Gp12 [1]. The monomeric CTD of Gp10 consists of an alpha-helix followed by a three-stranded, antiparallel beta-sheet, which is almost perpendicular to the helix. The three symmetry related beta-sheets interact with their first beta-strands in the trimer, thus creating a flower-like arrangement with the alpha-helices being the flower stem and the three beta-sheets being the petals.
Domain
G, H, I
PF23618Bacteriophage T4 gp9/10-like protein, C-terminal (T4_gp9_10_C)Bacteriophage T4 gp9/10-like protein, C-terminalThis entry represents the C-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment t ...This entry represents the C-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment to a host cell. The protein is active as a trimer, with each monomer being composed of three domains. The C-terminal domain is thought to be essential for trimerisation and is organised into an eight- stranded antiparallel beta-barrel, which was found to resemble the 'jelly roll' fold found in many viral capsid proteins [2]. Together with gp11, gp10 initiates the assembly of wedges that then go on to associate with a hub to form the viral baseplate [1].
Domain
D, E, F
PF07880Bacteriophage T4 gp9/10-like protein, N-terminal (T4_gp9_10_N)Bacteriophage T4 gp9/10-like protein, N-terminalThis entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment t ...This entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment to a host cell. The protein is active as a trimer, with each monomer being composed of three domains. The N-terminal domain consists of an extended polypeptide chain and two alpha helices. The alpha1 helix from each of the three monomers in the trimer interacts with its counterparts to form a coiled-coil structure. The middle domain is a seven-stranded beta-sandwich. This entry represents the region including these two domains. Noticeably, the long flexible region between N-terminal and middle domains may be required for the function of gp9 to transmit signals from the long tail fibres [2]. Together with gp11, gp10 initiates the assembly of wedges that then go on to associate with a hub to form the viral baseplate [1].
Domain
D, E, F
PF23618Bacteriophage T4 gp9/10-like protein, C-terminal (T4_gp9_10_C)Bacteriophage T4 gp9/10-like protein, C-terminalThis entry represents the C-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment t ...This entry represents the C-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment to a host cell. The protein is active as a trimer, with each monomer being composed of three domains. The C-terminal domain is thought to be essential for trimerisation and is organised into an eight- stranded antiparallel beta-barrel, which was found to resemble the 'jelly roll' fold found in many viral capsid proteins [2]. Together with gp11, gp10 initiates the assembly of wedges that then go on to associate with a hub to form the viral baseplate [1].
Domain
PF21456Baseplate wedge protein gp7, domain VI (Gp7_6th)Baseplate wedge protein gp7, domain VIThis domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and inf ...This domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and infection. This protein is organised into six domains connected by flexible linkers. This entry represents Domain VI, which forms a ribbon-like structure that interacts with N-terminal region of the protein Gp10 [1].
Domain
A, B
PF09215Bacteriophage T4, Gp8 (Phage-Gp8)Bacteriophage T4, Gp8- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M, N, O
IPR048390Long-tail fiber proximal subunit, trimerization domainDomain
M, N, O
IPR048391Long-tail fiber proximal subunit domainDomain
J, K, L
IPR015982Baseplate structural protein Gp11, N-terminal domain superfamilyHomologous Superfamily
J, K, L
IPR015976Bacteriophage T4, Gp11, C-terminal finger domainHomologous Superfamily
J, K, L
IPR043180Baseplate structural protein Gp11, C-terminal domainHomologous Superfamily
J, K, L
IPR014791Baseplate structural protein Gp11Family
J, K, L
IPR036214Baseplate structural protein Gp11 superfamilyHomologous Superfamily
G, H, I
IPR036240Gp9-like superfamilyHomologous Superfamily
G, H, I
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
G, H, I
IPR054430Baseplate wedge protein gp10, domain 3Domain
G, H, I
IPR056391Baseplate protein gp9-like, C-terminalDomain
G, H, I
IPR053827Baseplate structural protein Gp10, C-terminal domainDomain
G, H, I
IPR027411Baseplate structural protein Gp9/Gp10 middle domain superfamilyHomologous Superfamily
G, H, I
IPR034695Baseplate wedge protein gp10Family
D, E, F
IPR036240Gp9-like superfamilyHomologous Superfamily
D, E, F
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
D, E, F
IPR027412Baseplate structural protein Gp9 C-terminal domain superfamilyHomologous Superfamily
D, E, F
IPR056391Baseplate protein gp9-like, C-terminalDomain
D, E, F
IPR027411Baseplate structural protein Gp9/Gp10 middle domain superfamilyHomologous Superfamily
IPR034697Baseplate wedge protein gp7Family
IPR048812Baseplate wedge protein gp7, domain VIDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR048810Baseplate wedge protein gp7, helical domainDomain
IPR003961Fibronectin type IIIDomain
IPR048811Baseplate wedge protein gp7, domain VDomain
IPR036116Fibronectin type III superfamilyHomologous Superfamily
A, B
IPR036327Bacteriophage T4, Gp8 superfamilyHomologous Superfamily
A, B
IPR015298Bacteriophage T4, Gp8Domain