9X3Q | pdb_00009x3q

Phage T4 inner baseplate in post-tail-contraction state (genome-full particle)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyT6SS-like 8091259 3000580 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyT6SS-like 8091259 3000580 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F, G
PF06841T4-like virus tail tube protein gp19 (Phage_T4_gp19)T4-like virus tail tube protein gp19- Family
PF11246Base plate wedge protein 53 (Phage_gp53)Base plate wedge protein 53- Family
PF04965Baseplate wedge protein gp25 (GPW_gp25)Baseplate wedge protein gp25This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to att ...This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to attach to and penetrate host cell membranes. Gp25 is a component of the conserved wedge in the inner part of the baseplate and serves as a nucleus for sheath polymerisation, playing a critical role in sheath assembly and contraction [1,2]. The EPR motif (Glu-Pro-Arg, residues 85-87 of gp25) is conserved across all members of the family including orthologues from the RpoS-mediated general stress response system (called IraD) [3,4]. This motif interacts with the 'core bundle' composed of orthologues of T4 gp6 and gp7 proteins in contractile injection systems.
Domain
PF21428Baseplate wedge protein gp7, helical domain (Gp7_helical)Baseplate wedge protein gp7, helical domainThis domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and inf ...This domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and infection. This protein is organised into six domains connected by flexible linkers. This entry represents helix-turn-helix motif that is part of the long linker connecting the second and fourth domains [1].
Domain
PF21427Baseplate wedge protein gp7, domain V (Gp7_5th)Baseplate wedge protein gp7, domain VThis domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and inf ...This domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and infection. This protein is organised into six domains connected by flexible linkers. This entry represents Domain V, which is an insertion into domain IV and consists of an eight-stranded beta- barrel followed by two short alpha-helices [1].
Domain
A, B
PF21871Baseplate structural protein gp6, C-terminal domain III (Gp6_C-III)Baseplate structural protein gp6, C-terminal domain IIIBaseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain III.
Domain
A, B
PF21387Baseplate structural protein gp6, C-terminal domain I (Gp6_C-I)Baseplate structural protein gp6, C-terminal domain IBaseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain I, and adopts a 2-layer beta-sandwich fold.
Domain
A, B
PF21472Baseplate structural protein gp6, C-terminal domain II (gp6_C-domII)Baseplate structural protein gp6, C-terminal domain IIThis entry represents domain II found in the C-terminal of gp6 from bacteriophage T4, which adopts a beta-barrel fold. This protein is involved in tail assembly. It forms the gp25-(gp6)2-gp7 module, involved in sheath contraction [1,2]. Domain
A, B
PF21515Baseplate wedge protein gp6, domain II (Gp6_2nd)Baseplate wedge protein gp6, domain IIThis domain is found in Baseplate wedge protein gp6 from Enterobacteria phage T4 and similar sequences predominantly from tailed bacteriophages. Gp6 is a protein involved in tail assembly. This entry represents the first part of Domain II [1]. Domain
A, B
PF21379Baseplate wedge protein gp6-like, helical domain (Gp6-like_1st)Baseplate wedge protein gp6-like, helical domainThis domain is found in Baseplate wedge protein gp6 from Enterobacteria phage T4 and similar sequences predominantly from tailed bacteriophages. Gp6 is a protein involved in tail assembly. This entry represents its N-terminal helical domain [1]. Domain