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 9WF2 | pdb_00009wf2

Cryo-EM structure of GGCX-BGP complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]Thioredoxine9wf2B1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ThioredoxinECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth A]PF22777Vitamin K-dependent gamma-carboxylase, lumenal domain (VKGC_lumenal_dom)Vitamin K-dependent gamma-carboxylase, lumenal domainUsing reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase (VKGC) post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamat ...Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase (VKGC) post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase [1]. This entry represents the lumenal domain found in animals and bacteria. This domain is associated with Pfam:PF05090 [1,2].
Domain
B [auth A]PF05090HTTM domain (HTTM)HTTM domainThis entry represents the HTTM (for horizontally transferred transmembrane) domain found at the N-terminal in metazoan Vitamin K-dependent gamma-carboxylase and in diverse domain architectures in bacterial proteins. This domain shows four transmembra ...This entry represents the HTTM (for horizontally transferred transmembrane) domain found at the N-terminal in metazoan Vitamin K-dependent gamma-carboxylase and in diverse domain architectures in bacterial proteins. This domain shows four transmembrane regions [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth A]Vitamin K-dependent gamma-carboxylase
A [auth B]Osteocalcin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth A]IPR014710PpnP-like, jelly roll foldHomologous Superfamily
B [auth A]IPR011020HTTM-likeDomain
B [auth A]IPR053935Vitamin K-dependent gamma-carboxylase, lumenal domainDomain
B [auth A]IPR011051RmlC-like cupin domain superfamilyHomologous Superfamily
B [auth A]IPR053934HTTM domainDomain
B [auth A]IPR007782Vitamin K-dependent gamma-carboxylaseFamily
A [auth B]IPR058704Osteocalcin-like, C-terminal domainDomain
A [auth B]IPR039176OsteocalcinFamily
A [auth B]IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
A [auth B]IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
A [auth B]IPR002384Osteocalcin/matrix Gla proteinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth A]:  P38435
A [auth B]:  P02818